Version 10 (modified by gomidori, 9 years ago) (diff)


Ontologies used for extensions

ontologyabbrtracker URL
Cell OntologyCL
Gene OntologyGO
PfamPfamN/A, but contact helpdesk - pfam-help at
Protein OntologyPR
Sequence OntologySO

An example of each relation used should be added here:

For some ontologies, terms used should be added to the collection of ontology subsets that we maintain (as a /mini-ontologies/ sub-directory of the pombe-embl svn repository)

  • chebi.obo
  • pato.obo
  • cl.obo

For these ontologies please edit the is_a parent to point to PATO:0000001 ("quality"), CL:0000000 ("cell"), or CHEBI:24431 ("chemical entity") as appropriate.