wiki:OntologiesInUse

Version 5 (modified by val_wood, 9 years ago) (diff)

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Ontologies used for extensions

ontologyabbrURLrelations used (so far)
Cell OntologyCLhttps://sourceforge.net/tracker/?group_id=76834&atid=925065 occurs_in
CHEBICHEBI-has_substrate,in_presence_of,in_absence_of
PSI-MODMOD-requires_feature
Sequence OntologySO-acts_at
PFAMPFlocalizes-
PATO --

For now we there is a subdirectory in the pombe-embl subversion repository called "mini-ontologies" with three files:

chebi.obo pato.obo cl.obo

If you add a term to one of these files, please edit the isa to point to PATO:0000001 ("quality"), CL:0000000 ("cell") or CHEBI:24431 ("chemical entity") as appropriate.