wiki:OntologiesInUse

Version 6 (modified by val_wood, 9 years ago) (diff)

--

Ontologies used for extensions

ontologyabbrURLrelations used (so far)
Cell OntologyCLhttps://sourceforge.net/tracker/?group_id=76834&atid=925065 occurs_in
CHEBICHEBI-has_substrate,in_presence_of,in_absence_of
PSI-MODMOD-requires_feature
Sequence OntologySO-acts_at
PFAMPFlocalizes-
PATO --

An example of each "type " of relation used should be added here:

https://sourceforge.net/apps/trac/pombase/wiki/ListOfRelations

For

  • chebi.obo
  • pato.obo
  • cl.obo

Under svn/mini-ontologies Add term used to one of these files, please edit the isa to point to PATO:0000001 ("quality"), CL:0000000 ("cell") or CHEBI:24431 ("chemical entity") as appropriate.