Changes between Version 9 and Version 10 of OrthologInventories


Ignore:
Timestamp:
Oct 2, 2014, 5:21:13 AM (6 years ago)
Author:
vw253
Comment:

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  • OrthologInventories

    v9 v10  
    1919  * Sus1/SUS1 (OrthoMcl only) http://pfam.sanger.ac.uk/family/PF10163
    2020  * Mediator complex subunits (add details)
     21  * APC complex subunits (add details)
    2122  * Atp15/ATP15 (KOGS only) http://pfam.sanger.ac.uk/family/PF04627
    2223  * SPCC297.06c / YKL142W http://pfam.sanger.ac.uk/family/PF07957
    2324  * See also ortholog table releases
     25  *  vps51  OrthoMCL builds to human but not cerevisiae, others miss most
     26  * scm3   human HJURP  PMID:19563746 http://pfam.xfam.org/family/PF10384
     27  * mzt1   human MZT1 http://pfam.xfam.org/family/PF12554
     28  *  vph2 sequence orphan-> fungal specific-> vertebrate        http://pfam.xfam.org/family/PF11712
     29  * cwf20  http://pfam.xfam.org/family/PF10253
     30  *  sfc3 http://pfam.xfam.org/family/PF04182
     31  * nrm1 http://pfam.xfam.org/family/PF08528
     32  *  SPAC3A12.19 mrpl27  http://pfam.xfam.org/family/PF09809
     33  * Vta1 family http://pfam.xfam.org/family/PF04652
     34  * hop1 YIL072W; db_xref=PMID:15226405;
    2435
    25 
    26 
    27 || pombe gene || orthologous gene|| Comment||
    28 || vps51 || S. c VPS51 || OrthoMCL builds to human but not cerevisiae, others miss most||
    29 || scm3 || human HJURP || PMID:19563746 Pfam:PF10384 ||
    30 ||checked to here||
    31 
    32 || vph2|| VPH2 || sequence orphan-> fungal specific-> vertebrate        PF11712||
    33 ||cwf20|| NONE || vertebrate PF10253 ||
    34 || sfc3 ||
    35 ||mediator, various ||
    36 || apc, various||
    37 ||mitochondrial ribosomal, various||
    38 ||SPB, various ||
    39 || deltion paper, 4 new ||
    40 ||Takashi eg ||
    41 ||mzt1||
    42 ||SPAC13F5.04c/Vta1 family
    43 ||hop1 YIL072W; db_xref=PMID:15226405;
    44 ||SPAC3A12.19
    45 ||SPAC3A12.08
    46 ||SPAC29B12.03 YLR437C (detected builfding Pfam)
    47 ||SPBC776.06c || YOR129C ||
    48 ||SPAC23H4.08|| YDL115C ||
    49 ||SPAC458.06 ||YGR223C ||
    50 
    51 
    52 split cluster
    53 Res2(SPAC22F3.09c)is the S.pombe homolog of S. cerevisiae MBP1(YDL056W)
    54 Res1 (SPBC725.16)is the S. pombe homolog of S. cerevisiae SWI4(YER111C)
    55 Cdc10 (SPBC336.12c)is the S. pombe homolog of S. cerevisiae SWI6(YLR182W)
    56 
    57 SPBC16A3.07c YNR009W (Nrm1, Charly Chahwan)
    58 
    59 
    60 SPAC4D7.10c YOL148C (hAT subunit)
    61 SPACUNK4.15 YGR247W
    62 SPBC651.11c YBR288C PMID 14745133 ISS
    63 SPAC11H11.01 YCL008C PMID 14745133 ISS
    64 SPCC126.13c none SAP18 family
    65 SPAC1F3.07c YLR033W
    66 SPACC11E10.04 YMR282C
    67 SPAC7D4.11c YLR440C
    68 SPBC2A9.04cYDR143c
    69 Sir Antagonist ortholog
    70 
    71 MADS BOX assocaited
    72 
    73 SPBC16C6.09
    74 SPB1E7.09
    75 SPAC22A12.07
    76 with similar to S. cerevisiae YJR143C and YOR321W and YDR307W and YGR199W
    77 and YDL095W and YDL093W and YAL023C
    78 cluster split
    79 
    80 
    81 
    82 APR CDA1 YLR307W and YLR309W
    83 
    84 SPCC736.12c not sure
    85 
    86 MAR 16.15 cox18 YGR062C"
    87 
    88 MAR.02.05 S. pombe Hos3/ S. cerevisiae HSK1 (directed search)
    89 
    90 SPBC336.08 = spc24
    91 SPCC188.04c = spc25 Hiroshi PUB, I had an error
    92 
    93 ker1/PMID 15647272
    94 
    95 eukaryotic core
    96 predicted to range from 400 PMID 15068361 to ???r
    97 
    98 cdt1 (PMID 11836525) not RBH
    99 rec10
    100 hop1
    101 rap1 ? sdistant
    102 nse1 PMID:12966087
    103 sgo1
    104 sgo2
    105 Gould lab
    106 other GNC's ?
    107 diff list
    108 slx4 YLR135W
     36  * SPAC3A12.08
     37  * SPAC29B12.03 YLR437C (detected builfding Pfam)
     38  * SPBC776.06c || YOR129C ||
     39  * SPAC23H4.08|| YDL115C ||
     40  * SPAC458.06 ||YGR223C ||
     41  * SPAC4D7.10c YOL148C (hAT subunit)
     42  * SPACUNK4.15 YGR247W
     43  * SPBC651.11c YBR288C PMID 14745133 ISS
     44  * SPAC11H11.01 YCL008C PMID 14745133 ISS
     45  * SPCC126.13c none SAP18 family
     46  * SPAC1F3.07c YLR033W
     47  * SPACC11E10.04 YMR282C
     48  * SPAC7D4.11c YLR440C
     49  * SPBC2A9.04cYDR143c
     50  * SPBC16C6.09
     51  * SPB1E7.09
     52  * SPAC22A12.07
     53  * APR CDA1 YLR307W and YLR309W
     54  * SPCC736.12c not sure
     55  * cox18 YGR062C"
     56  *  Hos3/ S. cerevisiae HSK1 (directed search)
     57  * SPBC336.08 = spc24
     58  * SPCC188.04c = spc25 Hiroshi PUB, I had an error
     59  *  ker1/PMID 15647272
     60  * cdt1 (PMID 11836525) not RBH
     61 * rec10
     62 * rap1 ? sdistant
     63 *  nse1 PMID:12966087
     64 * sgo1
     65 *  sgo2
     66 * slx4 YLR135W
    10967
    11068
     
    12684of new S. cerevisiae gene YKL138C-A), family submitted to Pfam
    12785
    128 apc13
    12986shf1
    13087
    13188
    13289
    133 1. Booke chapter
     901. Book chapter
    134912. orthologo table diffs
    135925 fungal mitochondrial