Changes between Version 10 and Version 11 of OrthologInventories


Ignore:
Timestamp:
Oct 2, 2014, 5:32:47 AM (6 years ago)
Author:
vw253
Comment:

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  • OrthologInventories

    v10 v11  
    3333  * Vta1 family http://pfam.xfam.org/family/PF04652
    3434  * hop1 YIL072W; db_xref=PMID:15226405;
     35  * SPAC3A12.08
     36  * Spd1 YLR437C http://pfam.xfam.org/family/PF0859
     37  * apm3 YBR288C PMID:14745133
     38  * sst6 YCL008C PMID:14745133
    3539
    36   * SPAC3A12.08
    37   * SPAC29B12.03 YLR437C (detected builfding Pfam)
    38   * SPBC776.06c || YOR129C ||
    39   * SPAC23H4.08|| YDL115C ||
    40   * SPAC458.06 ||YGR223C ||
     40  * SPBC776.06c  YOR129C
     41  * SPAC23H4.08  YDL115C
     42  * SPAC458.06  YGR223C
    4143  * SPAC4D7.10c YOL148C (hAT subunit)
    4244  * SPACUNK4.15 YGR247W
    43   * SPBC651.11c YBR288C PMID 14745133 ISS
    44   * SPAC11H11.01 YCL008C PMID 14745133 ISS
    45   * SPCC126.13c none SAP18 family
     45  * SPCC126.13c  SAP18 family
    4646  * SPAC1F3.07c YLR033W
    4747  * SPACC11E10.04 YMR282C
    … …  
    4949  * SPBC2A9.04cYDR143c
    5050  * SPBC16C6.09
    51   * SPB1E7.09
    52   * SPAC22A12.07
    53   * APR CDA1 YLR307W and YLR309W
    54   * SPCC736.12c not sure
    55   * cox18 YGR062C"
    56   *  Hos3/ S. cerevisiae HSK1 (directed search)
     51  * cox18 (pers. comm. Nathalie.Bonnefoy) not reciprocal best hits but SPCC1442.15c is the functional ortholog of S. cerevisiae COX18
     52  * Hos3/ S. cerevisiae HSK1 (directed search)
    5753  * SPBC336.08 = spc24
    5854  * SPCC188.04c = spc25 Hiroshi PUB, I had an error
    5955  *  ker1/PMID 15647272
    6056  * cdt1 (PMID 11836525) not RBH
    61  * rec10
    62  * rap1 ? sdistant
    63  *  nse1 PMID:12966087
    64  * sgo1
    65  *  sgo2
    66  * slx4 YLR135W
     57  * rec10
     58  * rap1 ? sdistant
     59  * nse1 PMID:12966087
     60  * sgo1
     61  * sgo2
     62  * slx4 YLR135W
     63  * SPAC19D5.09c (ctf8)- the ortholog of YHR191C (CTF8),
     64  * SPBC106.05c was identified in a targeted search for the ortholog of YDR322C-A
     65  * SPAC1002.02|YLR018C (pers. comm. Maria Novatchkova) from Psi-blast, family included in Pfam as NPCC Pf08058
     66  * SPC32A11.01|YOR188W (pers. comm. Maria Novatchkova) from Psi-blast, family submitted to Pfam
     67  * SPCC417.02 | YKL138C-A (S. pombe Hos3 identified as ortholog of
     68  * kinetochores DASH complex component HSK3, targeted search for ortholog of new S. cerevisiae gene YKL138C-A), family submitted to Pfam
     69  * shf1
     70  * swi5/sus1
     71  * qci9
     72  * atp15
     73  * sds3
    6774
     75  == other  egs ==
    6876
    69 increased total gene number is due to new small genes; SPAC19D5.09c
    70 (ctf8)- the ortholog of YHR191C (CTF8), and SPBC106.05c was identified
    71 in a targeted search for the ortholog of YDR322C-A
    72 SPCC1442.15c|YGR062C (pers. comm. Nathalie.Bonnefoy) not reciprocal
    73 best
    74 hits but SPCC1442.15c is the functional ortholog of S. cerevisiae COX18
    75 
    76 SPAC1002.02|YLR018C (pers. comm. Maria Novatchkova) from Psi-blast,
    77 family included in Pfam as NPCC Pf08058
    78 
    79 SAPC32A11.01|YOR188W (pers. comm. Maria Novatchkova) from Psi-blast,
    80 family submitted to Pfam
    81 
    82 SPCC417.02 | YKL138C-A (S. pombe Hos3 identified as ortholog of
    83 kinetochores DASH complex component HSK3, targeted search for ortholog
    84 of new S. cerevisiae gene YKL138C-A), family submitted to Pfam
    85 
    86 shf1
    87 
    88 
    89 
    90 1. Book chapter
    91 2. orthologo table diffs
    92 5 fungal mitochondrial
    93 6 swi5/sus1 qci9 atp15 sds3
     77 * 1. Book chapter
     78 * 2. orthologo table diffs