Version 15 (modified by vw253, 7 years ago) (diff)


Examples of distant orthologs not picked up by most ortholog predictors

  • SPAC4D7.10c YOL148C (hAT subunit)
  • SPACUNK4.15 YGR247W
  • SPCC126.13c SAP18 family
  • SPAC1F3.07c YLR033W
  • SPACC11E10.04 YMR282C
  • SPAC7D4.11c YLR440C
  • SPBC2A9.04cYDR143c
  • SPBC336.08 = spc24
  • SPCC188.04c = spc25 Hiroshi PUB, I had an error
  • rec10
  • sgo1
  • sgo2
  • SPAC19D5.09c (ctf8)- the ortholog of YHR191C (CTF8),
  • SPBC106.05c was identified in a targeted search for the ortholog of YDR322C-A
  • SPAC1002.02|YLR018C (pers. comm. Maria Novatchkova) from Psi-blast, family included in Pfam PF08058
  • SPC32A11.01|YOR188W (pers. comm. Maria Novatchkova) from Psi-blast, family submitted to Pfam
  • SPCC417.02 | YKL138C-A (S. pombe Hos3 identified as ortholog of
  • kinetochores DASH complex component HSK3, targeted search for ortholog of new S. cerevisiae gene YKL138C-A), family submitted to Pfam
  • shf1
  • swi5/sus1
  • qci9
  • sds3

other egs

  • 1. Book chapter
  • 2. ortholog table diffs