Changes between Version 20 and Version 21 of OrthologInventoriesNoPom


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Timestamp:
Oct 1, 2014, 1:59:28 PM (6 years ago)
Author:
vw253
Comment:

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  • OrthologInventoriesNoPom

    v20 v21  
    1616 * VID22
    1717 * YGR071C
     18 * TOM6 (small)  this paper links budding yeast to human, no pombe yet http://www.ncbi.nlm.nih.gov/pubmed/18331822
    1819
    1920 === Glycogen metabolism ===
     
    2930 * FPS1
    3031
    31  === Tryptophan degradation/ de novo NAD biosynthesis ===
     32=== Mitochondrial ===
     33
     34 * COX23 yhr116w http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13626 (has human)
     35 
     36
     37=== Tryptophan degradation/ de novo NAD biosynthesis ===
    3238
    3339 * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity
     
    5460 * YMR210w medium-chain fatty acid metabolic process
    5561
    56  === Autophagy ===
     62 === Autophagy and vesicle transport ===
    5763 
    5864 * YHR195W NVJ1
    5965 * YDR357C CNL1
    6066 * ATG10,16,18,21,23,27
     67 * SRN2 YLR119W Component of the ESCRT-I complex
    6168
    6269 === biotin synthesis enzymes ===
     
    7279 ==  May be conserved but not yet detected ==
    7380
     81 * SPC12 PF06645
    7482  * YDl156W (WD repeat)
    75   * YML129C COX14
    7683  * YGR008C
    7784  * YJL131C AIM23? mitochondrial IF3
    78   * tom6 (small)
     85  *
    7986  * RSF1 YMR030W (yeast only)
    8087  * YCL044C
    8188  * DLS1
    8289  * IPT1
    83   * cox23 yhr116w
    8490  * OGG1
    85   * HPA2
    86   * YPL123C
    87   * YDL002
    88   * YBR152W
    89   * YBL031W
    90   * YJR101c-A
    91   * YGL217W
    92   * PRP7
    93   * PRP6
    94   * NTC20 YBR188C
    95   * UTP8 YGR128C
    96   * UTP9 YHR196W
    97   * TOM5 family will be In Pfam release 23
    98   * TOM6 family will be In Pfam release 23
    99   * SPC12 PF06645
    100   * YLR119W
    101 
     91  * HPA2 YPL123C
     92 
     93 
     94  * SPP381 YBR152W  (ascomycota only)
     95  * SHE1 YBL031W   (ascomycota only)
     96  * NTC20 YBR188C  (ascomycota only)
     97  * UTP8 YGR128C http://pfam.xfam.org/family/PF10395?type=Family#tabview=tab7 (ascomycota only)
     98  * UTP9 YHR196W psiing
     99 
     100 
    102101  * there are also 64 essential genes in budding yeast which do not appear to
    103102have a fission yeast ortholog
     
    105104
    106105
    107  == Distant orthologs not picked up by most ortholog predictors ==
     106 == Examples of distant orthologs not picked up by most ortholog predictors ==
    108107
    109108  * Sfr1 / MEI5 http://pfam.sanger.ac.uk/family/PF10376 (conserved to human)