Changes between Version 23 and Version 24 of OrthologInventoriesNoPom


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Timestamp:
Oct 1, 2014, 2:56:16 PM (6 years ago)
Author:
vw253
Comment:

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  • OrthologInventoriesNoPom

    v23 v24  
    44 === misc ===
    55
    6  * YAT1 YAR035W carnitine O-acetyltransferase
    7  * CYS4 YGR155W cystathionine beta-synthase
    8  * TAZ1 YPR140W TAfaZzin
    9  * YJL055W involved in the metabolism of purine and pyrimidine base analogues
    10  * HMO1 YDR174W rDNA-binding component of the Pol I transcription system
    11  * YPC1 YBR183W
    12  * HHO1 YPL127C histone H1
    13  * STE18 YJR086W gamma subunit of G protein
    14  * PDE2 YOR360C high affinity 3',5'-cAMP phosphodiesterase
    15  * KXD1 YGl079W
    16  * VID22
    17  * YGR071C
     6  * YAT1 YAR035W carnitine O-acetyltransferase
     7  * CYS4 YGR155W cystathionine beta-synthase
     8  * TAZ1 YPR140W TAfaZzin
     9  * YJL055W involved in the metabolism of purine and pyrimidine base analogues
     10  * HMO1 YDR174W rDNA-binding component of the Pol I transcription system
     11  * YPC1 YBR183W
     12  * HHO1 YPL127C histone H1
     13  * STE18 YJR086W gamma subunit of G protein
     14  * PDE2 YOR360C high affinity 3',5'-cAMP phosphodiesterase
     15  * KXD1 YGl079W
     16  * ALM1 YGR071C  adenine methyltransferase, has human, no pombe http://pfam.xfam.org/family/PF10237?type=Family#tabview=tab7
     17  * OGG1 YML060W CBF3 complex base excision repair protein (conserved in human)
    1818 
     19  === Glycogen metabolism ===
     20  * GLC3 YEL011W glycogen branching enzyme
     21  * GDB1YPR184W glycogen debranching enzyme
     22  * GPH1, YPR160W glycogen debranching enzyme
     23  * GPH1 YPR160W Glycogen PHosphorylase
     24  * GDB1,
     25  * GLG1,
     26  * GLG2,
     27  * GSY1,
     28  * GSY2,
     29  * FPS1
    1930
    20  === Glycogen metabolism ===
    21  * GLC3 YEL011W glycogen branching enzyme
    22  * GDB1YPR184W glycogen debranching enzyme
    23  * GPH1, YPR160W glycogen debranching enzyme
    24  * GPH1 YPR160W Glycogen PHosphorylase
    25  * GDB1,
    26  * GLG1,
    27  * GLG2,
    28  * GSY1,
    29  * GSY2,
    30  * FPS1
     31  === Mitochondrial ===
    3132
    32 === Mitochondrial ===
     33  * COX23 yhr116w http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13626 (has human)
     34  * TOM6 (small)  this paper links budding yeast to human, no pombe yet http://www.ncbi.nlm.nih.gov/pubmed/18331822
    3335
    34  * COX23 yhr116w http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13626 (has human)
    35  * TOM6 (small)  this paper links budding yeast to human, no pombe yet http://www.ncbi.nlm.nih.gov/pubmed/18331822
    36 
    37 === Tryptophan degradation/ de novo NAD biosynthesis ===
     36 === Tryptophan degradation/ de novo NAD biosynthesis ===
    3837
    3938 * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity
     
    6261 === Autophagy and vesicle transport ===
    6362 
    64   * YHR195W NVJ1
    65   * YDR357C CNL1
    66   * ATG10,16,18,21,23,27
     63   * CNL1 YDR357C
     64  * ATG21 YPL100W
     65  * ATG23 YLR431C
     66  * ATG27 YJL178C
    6767  * SRN2 YLR119W Component of the ESCRT-I complex
    6868
     
    8383  * YDl156W (WD repeat)
    8484  * YGR008C
    85  
    86   * DLS1  (check also itc1 isw2, dpb4)
    87   * OGG1 OGG1
     85  * FUN26 YAL022C
     86  * DLS1  (check also itc1 isw2, dpb4) 
    8887  * HPA2 YPL123C
    8988
    9089  * MGR1 YCL044C iAAA protease complex subunit (saccharomycetes only)
    9190  * RSF1 YMR030W (yeast only)
    92   * YJL131C AIM23? mitochondrial IF3 (saccharomycetes only) http://pfam.xfam.org/family/PF14877?type=Family#tabview=tab7
     91  * AIM23 YJL131C? mitochondrial IF3 (saccharomycetes only) http://pfam.xfam.org/family/PF14877?type=Family#tabview=tab7
    9392  * SPP381 YBR152W  (ascomycota only)
    9493  * SHE1 YBL031W   (ascomycota only)
    9594  * NTC20 YBR188C  (ascomycota only)
    9695  * UTP8 YGR128C http://pfam.xfam.org/family/PF10395?type=Family#tabview=tab7 (ascomycota only)
    97   * UTP9 YHR196W psiing  (utp5 paralog)
    98  
     96  * NVJ1  YHR195W  nuclear envelope protein (saccharomycetes only)   PSIBLASTING!!!!!!
     97  * VID22 YLR373C  is paralog of ENV11 (ascomycota only)
     98  * ENV11 YGR071C is paralog of VID22 (ascomycota only)
    9999 
    100100  * there are also 64 essential genes in budding yeast which do not appear to have a fission yeast ortholog
     
    119119
    120120
    121 
    122 FUN26
    123 
    124