Changes between Version 43 and Version 44 of OrthologInventoriesNoPom


Ignore:
Timestamp:
Oct 2, 2014, 5:02:23 AM (6 years ago)
Author:
vw253
Comment:

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  • OrthologInventoriesNoPom

    v43 v44  
    1414  * OGG1 YML060W "CBF3 complex"  base excision repair protein (conserved in human OGG1)
    1515
     16to check:
     17  * SRN2 YLR119W Component of the ESCRT-I complex
     18
    1619 === TMA (translation machinery associated) ===
     20
    1721  * TMA64 YDR117C (conserved in human, LGTN)
    1822  * TMA7  YLR262C-A ribosome associated  (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with  tblastn
    1923  * STF2 YGR008C  TMA10 paralog ( conserved in human SERBP1)
    2024  * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1)
    21 
    22 to check:
    23   * SRN2 YLR119W Component of the ESCRT-I complex
    2425 
    2526  === Glycogen metabolism ===
     
    4142 === Tryptophan degradation/ de novo NAD biosynthesis ===
    4243
    43  * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (conserved in human HAAO)
    44  * BNA2 YJR078W tryptophan 2,3-dioxygenase activity (conserved in human IDO2)
    45  * BNA4 YBL098W tryptophan met kynurenine 3-monooxygenase (conserved in human, KMO)
    46  * BNA5 YLR231C tryptophan met  kynureninase (conserved in human, KYNU)
    47  * BNA6 YFR047C biosynthesis of NAD from tryptophan via kynurenine  (conserved in human, QPRT)
     44  * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (conserved in human HAAO)
     45  * BNA2 YJR078W tryptophan 2,3-dioxygenase activity (conserved in human IDO2)
     46  * BNA4 YBL098W tryptophan met kynurenine 3-monooxygenase (conserved in human, KMO)
     47  * BNA5 YLR231C tryptophan met  kynureninase (conserved in human, KYNU)
     48  * BNA6 YFR047C biosynthesis of NAD from tryptophan via kynurenine  (conserved in human, QPRT)
    4849
    4950 === peroxisomal proteins and  components of the fatty acid oxidation pathway
     
    8081  * BLS1 YLR408C  BLOC-1 complex  ( NONE  detected but most likely conserved)
    8182 
    82 Other human members SNAP25,47, BLOC1S1,2,3,4,5  SYX12,DTNBP1, K7ELZO, PI4K2A
     83 Other human members SNAP25,47, BLOC1S1,2,3,4,5  SYX12,DTNBP1, K7ELZO, PI4K2A
    8384
    8485 === biotin synthesis enzymes ===
     
    9293  * BIO8 YHR214W-F  (NOT IN 288C) pseudogenic, highly degraded
    9394
    94  ==  May be conserved but not yet detected ==
    9595
    96 to check:
    97    * DLS1 YJL065C   DSL1 complex http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10252 with YBR278w
    98  
    99  CHRAC and isw1-2 complexes
     96 ===  CHRAC and isw1-2 complexes ===
     97
    10098  * ITC1  YGL133W CHRAC complex isw1-a  complex (conserved in human BAZ1A,B)
    10199  * YPL216w ITC1 paralog (uncharacterised) (conserved in human BAZ1A,B)
     
    104102 * IOC3 YFR013W isw1-a (PWWP domain)
    105103 * IOC4 YMR044W isw1-b (PWWP domain)
     104
     105 ==  May be conserved but not yet detected ==
     106
     107to check:
     108   * DLS1 YJL065C   DSL1 complex http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10252 with YBR278w
     109 
     110 
    106111
    107112