Changes between Version 57 and Version 58 of OrthologInventoriesNoPom


Ignore:
Timestamp:
Oct 2, 2014, 7:12:55 PM (6 years ago)
Author:
vw253
Comment:

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  • OrthologInventoriesNoPom

    v57 v58  
    3939  * YBR140C (from Compara)
    4040  * YCR011C (from Compara)
    41   * YER155C (from Compara)
    42   * YGR152C (from Compara)
     41  * YER155C (from Compara) check class
    4342  * YIR027C (from Compara)
    4443  * YKL088W (from Compara)
    45   * YKL092C (from Compara)
    46   * YKR072C (from Compara)
     44  * YKR072C (from Compara) CoA-synthesizing protein complex
    4745  * YLR422W (from Compara)
    4846 * YOL059W (from Compara)
     
    5048 * YOL081W (from Compara)
    5149 * YOR054C (from Compara)
    52  * YOR212W (from Compara)
    5350 * YPL147W (from Compara)
    5451 * YPR140W (from Compara)
     
    6966  * YFL030W
    7067  * YMR020W
    71   * YNL040W,
     68  * YNL040W possible FP
    7269  * CYS4 YGR155W cystathionine beta-synthase (conserved in human, CBS)
    7370
     
    108105  * YMR221C (from Compara)
    109106  * YNL125C (from Compara)
    110   * YNL298W (from Compara)
     107  * YNL298W (from Compara) WHY IS THIS MAPPING HERE>=?
    111108  * YOL119C (from Compara)
    112109  * YOR079C (from Compara)
     
    122119  * IOC3 YFR013W isw1-a (PWWP domain) (no compara REMOVE?)
    123120  * IOC4 YMR044W isw1-b (PWWP domain) (no compara REMOVE?)
    124   * HHO1 YPL127C histone H1  (conserved in human  H1F0)
     121  * HHO1 YPL127C histone H1  (conserved in human  H1F0) 
    125122  * YCL055W (from Compara)
    126123  * YDR440W (from Compara)
     
    130127  * YGR040W (from Compara)
    131128  * YJL056C (from Compara)
    132   * YKL068W (from Compara)
     129
    133130  * YKR034W (from Compara)
    134131  * YKR099W (from Compara)
     
    137134  * YPL177C (from Compara)
    138135
    139  === DNA recombination ===
    140 
    141   * YBR186W
    142   * YDL154W
    143   * YFL003C
    144   * YFR038W
    145   * YGL251C
    146   * YPL164C
    147 
    148  ===  meotic cell cycle -===
     136 == chromosome organization ==
     137  * ISW1 YBR245C isw1-a/b  complex amily so far only detected in yeast  http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10799:SF555
     138
     139 === nuckeocytoplsmic transport (checked) ===
     140
     141 * YKL068W (from Compara)
     142 * YMR047C (from Compara)
     143 * YNL298W (from Compara)
     144
     145  === DNA recombination ===
     146
     147  * YBR186W (from Compara)
     148  * YDL154W  (from Compara)
     149  * YFL003C (from Compara)
     150  * YFR038W (from Compara)
     151  * YGL251C (from Compara)
     152  * YPL164C (from Compara)
     153
     154 === repair ===
     155  * YFL007W this isn't repair, cant figure why its mapping here
     156  * YOR386W  (from Compara)
     157  * YDR054C  (from Compara)
     158  * YGR109C (from Compara)
     159  * OGG1 YML060W "CBF3 complex"  base excision repair protein (conserved in human OGG1)
     160
     161  === replication ===
     162 
     163  * YDL101C (from Compara)
     164 
     165 === mitotoic cell cycle regulation=== (does not map here)
     166 * YPR120C (from Compara)
     167
     168 === tRNA metabolic process ===
     169 
     170 * TRM3  YDL112W
     171 * PUS6 YGR169C
     172
     173  ===  meotic cell cycle -===
    149174 
    150175  * YIL112W, YOR195W check classification
    151176 
    152177  === signalling ===
    153   * YBR164C
    154   * YBR264C
    155   * YDL159W
    156   * YDR006C
    157   * YDR294C
    158   * YDR466W
    159   * YLR332W
    160   * YMR068W
    161   * YPL051W
    162 
    163 
    164  === Compara false positive ===
     178  * YBR164C (from Compara)
     179  * YBR264C (from Compara)
     180  * YDL159W (from Compara)
     181  * YDR006C (from Compara)
     182  * YDR294C (from Compara)
     183  * YDR466W (from Compara)
     184  * YPL051W (from Compara)
     185  *  YOR212W (from Compara) not annotated to signalling
     186  * YGR152C (from Compara)
     187  * YKL092C (from Compara) not annotated to signalling
     188
     189  === proteases ===
     190  * YCR045C
     191 
     192  === Compara false positive ===
    165193 
    166194  * YLR087C (Compara false positive - yeast specific protein)
    167195  * flocculin (deleted from slim, find)
     196  * YGR023W fugal sepecific  (low complexity)
     197  * YMR068W  false positive fungal only ankyrin repeat
     198  * YLR332W  fungal only  serine rich
     199
     200 === proteasome assembly ===
     201  * YGL004C
     202
     203   
     204
    168205
    169206 === misc ===
     
    173210  * AML1   adenine methyltransferase, has human, (conserved in human  N6AMT2) http://pfam.xfam.org/family/PF10237?type=Family#tabview=tab7
    174211  * PDE2 YOR360C high affinity 3',5'-cAMP phosphodiesterase (family has human members, but no pombe member http://pfam.xfam.org/family/PF00233?type=Family#tabview=tab7)
    175   * OGG1 YML060W "CBF3 complex"  base excision repair protein (conserved in human OGG1)
     212  * YJL073W possible fp, dnaj
    176213
    177214to check:
     
    243280  * ATG27 YJL178C mainly fungal but som metazoa. no human or pombe detected http://pfam.xfam.org/family/PF09451?type=Family#tabview=tab7
    244281  * ISW2  YOR304W CHRAC complex family so far only detected in yeast  http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10799:SF555
    245   * ISW1 YBR245C isw1-a/b  complex amily so far only detected in yeast  http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10799:SF555
    246 
     282 
    247283  * there are also 64 essential genes in budding yeast which do not appear to have a fission yeast ortholog
    248284