Changes between Version 60 and Version 61 of OrthologInventoriesNoPom


Ignore:
Timestamp:
Oct 3, 2014, 12:00:24 PM (6 years ago)
Author:
vw253
Comment:

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  • OrthologInventoriesNoPom

    v60 v61  
    2929
    3030  * TMA64 YDR117C (conserved in human, LGTN)
    31   * TMA7  YLR262C-A ribosome associated  (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with  tblastn
     31  * TMA7  YLR262C-A ribosome associated  (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with  tblastn 
    3232  * STF2 YGR008C  TMA10 paralog ( conserved in human SERBP1) (not  in compara list)
    3333  * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1)  (not in compara list)
     
    6060 === Other cellular amino acid/derivative  metabolic process ===
    6161 
     62 ==== urea metabolism ====
     63
     64  * YBR208C (from Compara)
     65 
     66
    6267  * YAL012W (from Compara)
    63   * YBR208C (from Compara)
    6468  * YCL064C (from Compara)
    6569  * YFL030W (from Compara)
     
    121125  * YCL055W (from Compara)
    122126  * YDR440W (from Compara)
    123   * YER040W (from Compara)
    124127  * YGL096W (from Compara)
    125128  * YGL254W (from Compara)
    126129  * YGR040W (from Compara)
    127130  * YJL056C (from Compara)
    128 
     131  * YER040W (from Compara)
    129132  * YKR034W (from Compara)
    130133  * YKR099W (from Compara)
     
    139142  * HOS1 YPR068C (from compara)
    140143
    141  === nuckeocytoplsmic transport (checked) ===
    142 
    143  * YKL068W (from Compara)
    144  * YMR047C (from Compara)
    145  * YNL298W (from Compara)
     144  === nucleocytoplsmic transport ===
     145
     146  * YKL068W (from Compara) (checked)
     147  * YMR047C (from Compara) (checked)
     148  * YNL298W (from Compara) (checked)
    146149
    147150  === DNA recombination ===
     
    155158
    156159 === repair ===
     160
    157161  * YFL007W this isn't repair, cant figure why its mapping here
    158162  * YOR386W  (from Compara)
     
    166170 
    167171 === mitotoic cell cycle regulation=== (does not map here)
    168  * YPR120C (from Compara)
     172 
     173  * YPR120C (from Compara)
    169174
    170175 === tRNA metabolic process ===
    171176 
    172  * TRM3  YDL112W (from Compara)
    173  * PUS6 YGR169C (from Compara)
     177  * TRM3  YDL112W (from Compara) checked
     178  * PUS6 YGR169C (from Compara) checked
    174179
    175180  ===  meotic cell cycle -===
     
    216221  * YPC1 YBR183W paralog YDC1 (conserved in human ACER3)
    217222  * YDC1 YPL087W paralog YPC1  (conserved in human ACER3)
    218   * AML1  adenine methyltransferase, has human, (conserved in human  N6AMT2) http://pfam.xfam.org/family/PF10237?type=Family#tabview=tab7
     223  * AML1  YGR001C adenine methyltransferase, has human, (conserved in human  N6AMT2) http://pfam.xfam.org/family/PF10237?type=Family#tabview=tab7
    219224  * PDE2 YOR360C high affinity 3',5'-cAMP phosphodiesterase (family has human members, but no pombe member http://pfam.xfam.org/family/PF00233?type=Family#tabview=tab7)
    220225  * YJL073W possible fp, dnaj
     
    227232  === Mitochondrial ===
    228233
    229   * COX23 yhr116w http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13626 (has human)
     234  * COX23 YHR116w http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13626 (has human)
    230235  * TOM6 (small)  this paper links budding yeast to human, no pombe yet http://www.ncbi.nlm.nih.gov/pubmed/18331822
    231236