Changes between Version 62 and Version 63 of OrthologInventoriesNoPom


Ignore:
Timestamp:
Oct 3, 2014, 12:14:49 PM (6 years ago)
Author:
vw253
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • OrthologInventoriesNoPom

    v62 v63  
    44=== Lipid metabolic process (mainly fatty acid oxidation?) ===
    55 
    6   * YAT1 YAR035W carnitine O-acetyltransferase (conserved in human, CPT2)
    7   * YBR041W (from compara)
     6  * YAT1 YAR035W carnitine O-acetyltransferase (human, CPT2)
     7  * YBR041W (from Compara)
    88  * EHT1 YBR177c medium-chain fatty acid metabolic process
    99  * YDR287W (from Compara)
    … …  
    1414  * POT1 (FOX3)  YIL160C
    1515  * YJL153C (from Compara)
    16   * TES1 YJR019C  (conserved in human, ACOT8)
     16  * TES1 YJR019C  (human ACOT8)
    1717  * YLR118C (from Compara)
    18   * ECI1 YLR284C  (conserved in human, PECI)
    19   * CAT2 YML042W  (conserved in human, CRAT)
     18  * ECI1 YLR284C  (human, PECI)
     19  * CAT2 YML042W  (human CRAT)
    2020  * YMR210W similar to EEB1 and EHT1 medium-chain fatty acid metabolic process
    21   * DCI1  YOR180C (conserved in human, PECI)
     21  * DCI1  YOR180C (human PECI)
    2222  * YPL069C
    2323  * EEB1 YPL095c medium-chain fatty acid ethyl ester biosynthesis during fermentation
    2424  * YPL103C
    25   * TAZ1 YPR140W TAfaZzin (conserved in human , TAZ)
     25  * TAZ1 YPR140W TAfaZzin (human , TAZ)
    2626 
    2727
    2828=== TMA (translation machinery associated) ===
    2929
    30   * TMA64 YDR117C (conserved in human, LGTN)
     30  * TMA64 YDR117C (human LGTN)
    3131  * TMA7  YLR262C-A ribosome associated  (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with  tblastn
    32   * STF2 YGR008C  TMA10 paralog ( conserved in human SERBP1) (not  in compara list)
     32  * STF2 YGR008C  TMA10 paralog ( human SERBP1) (not  in compara list)
    3333  * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1)  (not in compara list)
    3434
    … …  
    5252 === Tryptophan degradation/ de novo NAD biosynthesis ===
    5353
    54   * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (conserved in human HAAO)
    55   * BNA2 YJR078W tryptophan 2,3-dioxygenase activity (conserved in human IDO2)
    56   * BNA4 YBL098W tryptophan met kynurenine 3-monooxygenase (conserved in human, KMO)
    57   * BNA5 YLR231C tryptophan met  kynureninase (conserved in human, KYNU)
    58   * BNA6 YFR047C biosynthesis of NAD from tryptophan via kynurenine  (conserved in human, QPRT) (missing from compara)
     54  * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (human HAAO)
     55  * BNA2 YJR078W tryptophan 2,3-dioxygenase activity (human IDO2)
     56  * BNA4 YBL098W tryptophan met kynurenine 3-monooxygenase (human KMO)
     57  * BNA5 YLR231C tryptophan met  kynureninase (human KYNU)
     58  * BNA6 YFR047C biosynthesis of NAD from tryptophan via kynurenine  (human QPRT) (missing from compara)
    5959
    6060 === Other cellular amino acid/derivative  metabolic process ===
    … …  
    7070  * YMR020W (from Compara)
    7171  * YNL040W possible FP (from Compara)
    72   * CYS4 YGR155W cystathionine beta-synthase (conserved in human, CBS)
     72  * CYS4 YGR155W cystathionine beta-synthase (human CBS)
    7373
    7474 === Carbohydrate metabolic process ===
    … …  
    8585=== subset of carbohydrate , Glycogen metabolism ===
    8686
    87   * GLC3 YEL011W glycogen branching enzyme (conserved in human GBE1)
    88   * GSY1 YFR015C (conserved in human GYS1)
     87  * GLC3 YEL011W glycogen branching enzyme (human GBE1)
     88  * GSY1 YFR015C (human GYS1)
    8989  * GLG2 YJL137C 
    9090  * GLG1 YKR058W 
    91   * GSY2 YLR258W (conserved in human GYS1)
    92   * GPH1 YPR160W glycogen debranching enzyme (conserved in human PYGB)
    93   * GDB1 YPR184W glycogen debranching enzyme (conserved in human AGL)
     91  * GSY2 YLR258W (human GYS1)
     92  * GPH1 YPR160W glycogen debranching enzyme (human PYGB)
     93  * GDB1 YPR184W glycogen debranching enzyme (human AGL)
    9494 
    9595
    9696 === Transmembrane Transporters ===
    9797
    98   * FUN26 YAL022C (conserved in human SLC29A1,2,3,4)
     98  * FUN26 YAL022C (human SLC29A1,2,3,4)
    9999  * YBR241C (from Compara)
    100100  * YBR296C (from Compara)
    … …  
    118118 ===  trancription and chromatin remodelleing complexes CHRAC and isw1-2 complexes ===
    119119
    120   * ITC1  YGL133W CHRAC complex isw1-a  complex (conserved in human BAZ1A,B) (no compara)
    121   * YPL216W ITC1 paralog (uncharacterised) (conserved in human BAZ1A,B) (no compara)
     120  * ITC1  YGL133W CHRAC complex isw1-a  complex (human BAZ1A,B) (no compara)
     121  * YPL216W ITC1 paralog (uncharacterised) (human BAZ1A,B) (no compara)
    122122  * IOC3 YFR013W isw1-a (PWWP domain) (no compara REMOVE?)
    123123  * IOC4 YMR044W isw1-b (PWWP domain) (no compara REMOVE?)
    124   * HHO1 YPL127C histone H1  (conserved in human  H1F0) 
     124  * HHO1 YPL127C histone H1  (human  H1F0) 
    125125  * YCL055W (from Compara)
    126126  * YDR440W (from Compara)
    … …  
    140140  * ISW2  YOR304W CHRAC complex family  confirmed by compara (FP?)
    141141  * YDR096W (from Compara)
    142   * HOS1 YPR068C (from compara)
     142  * HOS1 YPR068C (from Compara)
    143143
    144144  === nucleocytoplsmic transport  ===
    … …  
    163163  * YDR054C  (from Compara)
    164164  * YGR109C (from Compara)
    165   * OGG1 YML060W "CBF3 complex"  base excision repair protein (conserved in human OGG1)
     165  * OGG1 YML060W "CBF3 complex"  base excision repair protein (human OGG1)
    166166
    167167  === replication ===
    … …  
    198198  === proteases ===
    199199
    200   * YCR045C (from Compara)
     200  * YCR045C (from Compara) (REMOVE)
    201201 
    202202 === proteasome assembly ===