6 | | * YAT1 YAR035W carnitine O-acetyltransferase (human, CPT2) |
7 | | * YBR041W (from Compara) |
8 | | * EHT1 YBR177c medium-chain fatty acid metabolic process |
9 | | * YDR287W (from Compara) |
10 | | * YDR294C (from Compara) |
11 | | * FAA2 YER015W (human ACSL1,5,6 ?) |
12 | | * POX1 YGL205W (human candidates ACOX1 and 2) |
13 | | * YHR046C (from Compara) |
14 | | * POT1 (FOX3) YIL160C |
15 | | * YJL153C (from Compara) |
16 | | * TES1 YJR019C (human ACOT8) |
17 | | * YLR118C (from Compara) |
18 | | * ECI1 YLR284C (human, PECI) |
19 | | * CAT2 YML042W (human CRAT) |
20 | | * YMR210W similar to EEB1 and EHT1 medium-chain fatty acid metabolic process |
21 | | * DCI1 YOR180C (human PECI) |
22 | | * YPL069C |
23 | | * EEB1 YPL095c medium-chain fatty acid ethyl ester biosynthesis during fermentation |
24 | | * YPL103C |
25 | | * TAZ1 YPR140W TAfaZzin (human , TAZ) |
26 | | * SPS19 YNL202W SPAC922.06 http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24315:SF0 (no coompara) |
27 | | |
28 | | |
29 | | === TMA (translation machinery associated) === |
30 | | |
31 | | * TMA64 YDR117C (human LGTN) |
32 | | * TMA7 YLR262C-A ribosome associated (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with tblastn |
33 | | * STF2 YGR008C TMA10 paralog ( human SERBP1) (not in compara list) |
34 | | * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1) (not in compara list) |
35 | | |
36 | | |
37 | | === nucleobase containing small molecule met === |
38 | | |
39 | | * YBR140C (from Compara) |
40 | | * YCR011C (from Compara) |
41 | | * YER155C (from Compara) check class |
42 | | * YIR027C (from Compara) |
43 | | * YKL088W (from Compara) |
44 | | * YKR072C (from Compara) CoA-synthesizing protein complex |
45 | | * YLR422W (from Compara) |
46 | | * YOL059W (from Compara) |
47 | | * YOL075C (from Compara) |
48 | | * YOL081W (from Compara) |
49 | | * YOR054C (from Compara) |
50 | | * YPL147W (from Compara) |
51 | | * YPR140W (from Compara) |
52 | | |
53 | | === Tryptophan degradation/ de novo NAD biosynthesis === |
54 | | |
55 | | * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (human HAAO) |
56 | | * BNA2 YJR078W tryptophan 2,3-dioxygenase activity (human IDO2) |
57 | | * BNA4 YBL098W tryptophan met kynurenine 3-monooxygenase (human KMO) |
58 | | * BNA5 YLR231C tryptophan met kynureninase (human KYNU) |
59 | | * BNA6 YFR047C biosynthesis of NAD from tryptophan via kynurenine (human QPRT) (missing from compara) |
60 | | |
61 | | === Other cellular amino acid/derivative metabolic process === |
62 | | |
63 | | * YAL012W (from Compara) |
64 | | * YCL064C (from Compara) |
65 | | * YFL030W (from Compara) |
66 | | * YMR020W FMS1 (from Compara) |
67 | | * YNL040W possible FP (from Compara) |
68 | | * CYS4 YGR155W cystathionine beta-synthase (human CBS) |
69 | | |
70 | | ==== urea metabolism ==== |
71 | | |
72 | | * YBR208C (from Compara) |
73 | | |
74 | | === Carbohydrate metabolic process === |
75 | | |
76 | | * YDL174C (from Compara) |
77 | | * YDR109C (from Compara) |
78 | | * YHL032C (from Compara) |
79 | | * YHR104W (from Compara) |
80 | | * YHR210C (from Compara) |
81 | | * YMR164C (from Compara) |
82 | | * YNR071C (from Compara) |
83 | | * YPR026W (from Compara) |
84 | | |
85 | | === subset of carbohydrate , Glycogen metabolism === |
86 | | |
87 | | * GLC3 YEL011W glycogen branching enzyme (human GBE1) |
88 | | * GSY1 YFR015C (human GYS1) |
89 | | * GLG2 YJL137C |
90 | | * GLG1 YKR058W |
91 | | * GSY2 YLR258W (human GYS1) |
92 | | * GPH1 YPR160W glycogen debranching enzyme (human PYGB) |
93 | | * GDB1 YPR184W glycogen debranching enzyme (human AGL) |
94 | | |
95 | | |
96 | | === Transmembrane Transporters === |
97 | | |
98 | | * FUN26 YAL022C (human SLC29A1,2,3,4) |
99 | | * YBR241C (from Compara) |
100 | | * YBR296C (from Compara) |
101 | | * YCR011C (from Compara) |
102 | | * YCR075C (from Compara) |
103 | | * YGL104C (from Compara) |
104 | | * YGR055W (from Compara) |
105 | | * YHL036W (from Compara) |
106 | | * YKL221W (from Compara) |
107 | | * YLR348C (from Compara) |
108 | | * YMR221C (from Compara) |
109 | | * YNL125C (from Compara) |
110 | | * YNL298W (from Compara) WHY IS THIS MAPPING HERE>=? |
111 | | * YOL119C (from Compara) |
112 | | * YOR079C (from Compara) |
113 | | * YOR306C (from Compara) |
114 | | * YPL147W (from Compara) |
115 | | * YPR021C (from Compara) |
116 | | * YPR192W AQY1 (from Compara) |
117 | | * PXA2 YKL188C (possible human ABCD4) |
118 | | |
119 | | |
120 | | === transcription and chromatin remodelleing complexes CHRAC and isw1-2 complexes === |
121 | | |
122 | | * ITC1 YGL133W CHRAC complex isw1-a complex (human BAZ1A,B) (no compara) |
123 | | * YPL216W ITC1 paralog (uncharacterised) (human BAZ1A,B) (no compara) |
124 | | * IOC3 YFR013W isw1-a (PWWP domain) (no compara REMOVE?) |
125 | | * IOC4 YMR044W isw1-b (PWWP domain) (no compara REMOVE?) |
126 | | * HHO1 YPL127C histone H1 (human H1F0) |
127 | | * YCL055W (from Compara) |
128 | | * YDR440W (from Compara) |
129 | | * YGL096W (from Compara) |
130 | | * YGL254W (from Compara) |
131 | | * YGR040W (from Compara) |
132 | | * YJL056C (from Compara) |
133 | | * YER040W (from Compara) |
134 | | * YKR034W (from Compara) |
135 | | * YKR099W (from Compara) |
136 | | * YMR164C (from Compara) |
137 | | * YNL239W (from Compara) |
138 | | * YPL177C (from Compara) |
139 | | |
140 | | == chromosome organization == |
141 | | * ISW1 YBR245C isw1-a/b complex amily confirmed by compara (FP?) |
142 | | * ISW2 YOR304W CHRAC complex family confirmed by compara (FP?) |
143 | | * YDR096W (from Compara) |
144 | | * HOS1 YPR068C (from Compara) |
145 | | |
146 | | === nucleocytoplsmic transport === |
147 | | |
148 | | * YKL068W (from Compara) (checked) |
149 | | * YMR047C (from Compara) (checked) |
150 | | * YNL298W (from Compara) (checked) |
151 | | |
152 | | === DNA recombination === |
153 | | |
154 | | * YBR186W (from Compara) |
155 | | * YDL154W (from Compara) |
156 | | * YFL003C (from Compara) |
157 | | * YFR038W (from Compara) |
158 | | * YGL251C (from Compara) |
159 | | * YPL164C (from Compara) |
160 | | |
161 | | === repair === |
162 | | |
163 | | * YFL007W this isn't repair, cant figure why its mapping here |
164 | | * YOR386W (from Compara) |
165 | | * YDR054C (from Compara) |
166 | | * YGR109C (from Compara) |
167 | | * OGG1 YML060W "CBF3 complex" base excision repair protein (human OGG1) |
168 | | |
169 | | === replication === |
170 | | |
171 | | * YDL101C (from Compara) |
172 | | |
173 | | === mitotoic cell cycle regulation=== (does not map here) |
174 | | |
175 | | * YPR120C (from Compara) |
176 | | |
177 | | === tRNA metabolic process === |
178 | | |
179 | | * TRM3 YDL112W (from Compara) checked |
180 | | * PUS6 YGR169C (from Compara) checked |
181 | | * RNY1 YPL123C (no compara) |
182 | | |
183 | | === meotic cell cycle -=== |
184 | | |
185 | | * YIL112W (from Compara) check classification |
186 | | |
187 | | |
188 | | === signalling === |
189 | | |
190 | | * YBR164C (from Compara) |
191 | | * YBR264C (from Compara) |
192 | | * YDL159W (from Compara) |
193 | | * YDR006C (from Compara) |
194 | | * YDR294C (from Compara) |
195 | | * YDR466W (from Compara) |
196 | | * YPL051W (from Compara) |
197 | | * YOR212W (from Compara) not annotated to signalling |
198 | | * YGR152C (from Compara) |
199 | | * YKL092C (from Compara) not annotated to signalling |
200 | | * PDE2 YOR360C high affinity 3',5'-cAMP phosphodiesterase (family has human members, but no pombe member http://pfam.xfam.org/family/PF00233?type=Family#tabview=tab7) |
201 | | |
202 | | === Mitochondrial === |
203 | | |
204 | | * COX23 YHR116w http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13626 (has human) (no compara) |
205 | | * TOM6 YOR045W this paper links budding yeast to human, no pombe yet http://www.ncbi.nlm.nih.gov/pubmed/18331822 (no compara) |
206 | | |
207 | | === proteases === |
208 | | |
209 | | * YCR045C (from Compara) (REMOVE?) |
210 | | |
211 | | === proteasome assembly === |
212 | | |
213 | | * YGL004C (from Compara) |
214 | | |
215 | | === misc === |
216 | | move to above (in list) |
217 | | * YPC1 YBR183W paralog YDC1 (conserved in human ACER3) (no compara) |
218 | | * YDC1 YPL087W paralog YPC1 (conserved in human ACER3) (no compara) |
219 | | * SRN2 YLR119W Component of the ESCRT-I complex (no compara) |
220 | | * KXD1 YGL079W BLOC-1 complex (conserved in human KXD1) |
221 | | * SNN1 YNL086W BLOC-1 complex (conserved in human SNAPIN & BLOC1S6) |
222 | | === Unknown process === |
223 | | |
224 | | * AML1 YGR001C adenine methyltransferase, has human, (conserved in human N6AMT2) http://pfam.xfam.org/family/PF10237?type=Family#tabview=tab7 |
225 | | |
226 | | === Compara false positive === |
227 | | |
228 | | * YLR087C (Compara false positive - yeast specific protein) |
229 | | * YGR023W fugal sepecific (low complexity) |
230 | | * YMR068W false positive fungal only ankyrin repeat |
231 | | * YLR332W fungal only serine rich |
232 | | * YOR195W fungal only http://pfam.xfam.org/family/PF12709?type=Family#tabview=tab7 |
233 | | * YDR235W http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17204:SF23 |
234 | | * YNL016W http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24622:SF45 |
235 | | * YIR019C |
236 | | * YDR054C delete is conserved in pombe |
237 | | * YDR519W domain only, check |
238 | | * YML078W domain only, check |
239 | | * removed from list to here |
240 | | |
241 | | to check: |
242 | | * YDL122W candidate for pombe Ubp11 http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006:SF412 |
243 | | * YJL073W possible fp, dnaj |
244 | | * FPS1 YLL043W (not sure about this) |
245 | | |
246 | | |