| 6 | | * YAT1 YAR035W carnitine O-acetyltransferase (human, CPT2) |
| 7 | | * YBR041W (from Compara) |
| 8 | | * EHT1 YBR177c medium-chain fatty acid metabolic process |
| 9 | | * YDR287W (from Compara) |
| 10 | | * YDR294C (from Compara) |
| 11 | | * FAA2 YER015W (human ACSL1,5,6 ?) |
| 12 | | * POX1 YGL205W (human candidates ACOX1 and 2) |
| 13 | | * YHR046C (from Compara) |
| 14 | | * POT1 (FOX3) YIL160C |
| 15 | | * YJL153C (from Compara) |
| 16 | | * TES1 YJR019C (human ACOT8) |
| 17 | | * YLR118C (from Compara) |
| 18 | | * ECI1 YLR284C (human, PECI) |
| 19 | | * CAT2 YML042W (human CRAT) |
| 20 | | * YMR210W similar to EEB1 and EHT1 medium-chain fatty acid metabolic process |
| 21 | | * DCI1 YOR180C (human PECI) |
| 22 | | * YPL069C |
| 23 | | * EEB1 YPL095c medium-chain fatty acid ethyl ester biosynthesis during fermentation |
| 24 | | * YPL103C |
| 25 | | * TAZ1 YPR140W TAfaZzin (human , TAZ) |
| 26 | | * SPS19 YNL202W SPAC922.06 http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24315:SF0 (no coompara) |
| 27 | | |
| 28 | | |
| 29 | | === TMA (translation machinery associated) === |
| 30 | | |
| 31 | | * TMA64 YDR117C (human LGTN) |
| 32 | | * TMA7 YLR262C-A ribosome associated (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with tblastn |
| 33 | | * STF2 YGR008C TMA10 paralog ( human SERBP1) (not in compara list) |
| 34 | | * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1) (not in compara list) |
| 35 | | |
| 36 | | |
| 37 | | === nucleobase containing small molecule met === |
| 38 | | |
| 39 | | * YBR140C (from Compara) |
| 40 | | * YCR011C (from Compara) |
| 41 | | * YER155C (from Compara) check class |
| 42 | | * YIR027C (from Compara) |
| 43 | | * YKL088W (from Compara) |
| 44 | | * YKR072C (from Compara) CoA-synthesizing protein complex |
| 45 | | * YLR422W (from Compara) |
| 46 | | * YOL059W (from Compara) |
| 47 | | * YOL075C (from Compara) |
| 48 | | * YOL081W (from Compara) |
| 49 | | * YOR054C (from Compara) |
| 50 | | * YPL147W (from Compara) |
| 51 | | * YPR140W (from Compara) |
| 52 | | |
| 53 | | === Tryptophan degradation/ de novo NAD biosynthesis === |
| 54 | | |
| 55 | | * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (human HAAO) |
| 56 | | * BNA2 YJR078W tryptophan 2,3-dioxygenase activity (human IDO2) |
| 57 | | * BNA4 YBL098W tryptophan met kynurenine 3-monooxygenase (human KMO) |
| 58 | | * BNA5 YLR231C tryptophan met kynureninase (human KYNU) |
| 59 | | * BNA6 YFR047C biosynthesis of NAD from tryptophan via kynurenine (human QPRT) (missing from compara) |
| 60 | | |
| 61 | | === Other cellular amino acid/derivative metabolic process === |
| 62 | | |
| 63 | | * YAL012W (from Compara) |
| 64 | | * YCL064C (from Compara) |
| 65 | | * YFL030W (from Compara) |
| 66 | | * YMR020W FMS1 (from Compara) |
| 67 | | * YNL040W possible FP (from Compara) |
| 68 | | * CYS4 YGR155W cystathionine beta-synthase (human CBS) |
| 69 | | |
| 70 | | ==== urea metabolism ==== |
| 71 | | |
| 72 | | * YBR208C (from Compara) |
| 73 | | |
| 74 | | === Carbohydrate metabolic process === |
| 75 | | |
| 76 | | * YDL174C (from Compara) |
| 77 | | * YDR109C (from Compara) |
| 78 | | * YHL032C (from Compara) |
| 79 | | * YHR104W (from Compara) |
| 80 | | * YHR210C (from Compara) |
| 81 | | * YMR164C (from Compara) |
| 82 | | * YNR071C (from Compara) |
| 83 | | * YPR026W (from Compara) |
| 84 | | |
| 85 | | === subset of carbohydrate , Glycogen metabolism === |
| 86 | | |
| 87 | | * GLC3 YEL011W glycogen branching enzyme (human GBE1) |
| 88 | | * GSY1 YFR015C (human GYS1) |
| 89 | | * GLG2 YJL137C |
| 90 | | * GLG1 YKR058W |
| 91 | | * GSY2 YLR258W (human GYS1) |
| 92 | | * GPH1 YPR160W glycogen debranching enzyme (human PYGB) |
| 93 | | * GDB1 YPR184W glycogen debranching enzyme (human AGL) |
| 94 | | |
| 95 | | |
| 96 | | === Transmembrane Transporters === |
| 97 | | |
| 98 | | * FUN26 YAL022C (human SLC29A1,2,3,4) |
| 99 | | * YBR241C (from Compara) |
| 100 | | * YBR296C (from Compara) |
| 101 | | * YCR011C (from Compara) |
| 102 | | * YCR075C (from Compara) |
| 103 | | * YGL104C (from Compara) |
| 104 | | * YGR055W (from Compara) |
| 105 | | * YHL036W (from Compara) |
| 106 | | * YKL221W (from Compara) |
| 107 | | * YLR348C (from Compara) |
| 108 | | * YMR221C (from Compara) |
| 109 | | * YNL125C (from Compara) |
| 110 | | * YNL298W (from Compara) WHY IS THIS MAPPING HERE>=? |
| 111 | | * YOL119C (from Compara) |
| 112 | | * YOR079C (from Compara) |
| 113 | | * YOR306C (from Compara) |
| 114 | | * YPL147W (from Compara) |
| 115 | | * YPR021C (from Compara) |
| 116 | | * YPR192W AQY1 (from Compara) |
| 117 | | * PXA2 YKL188C (possible human ABCD4) |
| 118 | | |
| 119 | | |
| 120 | | === transcription and chromatin remodelleing complexes CHRAC and isw1-2 complexes === |
| 121 | | |
| 122 | | * ITC1 YGL133W CHRAC complex isw1-a complex (human BAZ1A,B) (no compara) |
| 123 | | * YPL216W ITC1 paralog (uncharacterised) (human BAZ1A,B) (no compara) |
| 124 | | * IOC3 YFR013W isw1-a (PWWP domain) (no compara REMOVE?) |
| 125 | | * IOC4 YMR044W isw1-b (PWWP domain) (no compara REMOVE?) |
| 126 | | * HHO1 YPL127C histone H1 (human H1F0) |
| 127 | | * YCL055W (from Compara) |
| 128 | | * YDR440W (from Compara) |
| 129 | | * YGL096W (from Compara) |
| 130 | | * YGL254W (from Compara) |
| 131 | | * YGR040W (from Compara) |
| 132 | | * YJL056C (from Compara) |
| 133 | | * YER040W (from Compara) |
| 134 | | * YKR034W (from Compara) |
| 135 | | * YKR099W (from Compara) |
| 136 | | * YMR164C (from Compara) |
| 137 | | * YNL239W (from Compara) |
| 138 | | * YPL177C (from Compara) |
| 139 | | |
| 140 | | == chromosome organization == |
| 141 | | * ISW1 YBR245C isw1-a/b complex amily confirmed by compara (FP?) |
| 142 | | * ISW2 YOR304W CHRAC complex family confirmed by compara (FP?) |
| 143 | | * YDR096W (from Compara) |
| 144 | | * HOS1 YPR068C (from Compara) |
| 145 | | |
| 146 | | === nucleocytoplsmic transport === |
| 147 | | |
| 148 | | * YKL068W (from Compara) (checked) |
| 149 | | * YMR047C (from Compara) (checked) |
| 150 | | * YNL298W (from Compara) (checked) |
| 151 | | |
| 152 | | === DNA recombination === |
| 153 | | |
| 154 | | * YBR186W (from Compara) |
| 155 | | * YDL154W (from Compara) |
| 156 | | * YFL003C (from Compara) |
| 157 | | * YFR038W (from Compara) |
| 158 | | * YGL251C (from Compara) |
| 159 | | * YPL164C (from Compara) |
| 160 | | |
| 161 | | === repair === |
| 162 | | |
| 163 | | * YFL007W this isn't repair, cant figure why its mapping here |
| 164 | | * YOR386W (from Compara) |
| 165 | | * YDR054C (from Compara) |
| 166 | | * YGR109C (from Compara) |
| 167 | | * OGG1 YML060W "CBF3 complex" base excision repair protein (human OGG1) |
| 168 | | |
| 169 | | === replication === |
| 170 | | |
| 171 | | * YDL101C (from Compara) |
| 172 | | |
| 173 | | === mitotoic cell cycle regulation=== (does not map here) |
| 174 | | |
| 175 | | * YPR120C (from Compara) |
| 176 | | |
| 177 | | === tRNA metabolic process === |
| 178 | | |
| 179 | | * TRM3 YDL112W (from Compara) checked |
| 180 | | * PUS6 YGR169C (from Compara) checked |
| 181 | | * RNY1 YPL123C (no compara) |
| 182 | | |
| 183 | | === meotic cell cycle -=== |
| 184 | | |
| 185 | | * YIL112W (from Compara) check classification |
| 186 | | |
| 187 | | |
| 188 | | === signalling === |
| 189 | | |
| 190 | | * YBR164C (from Compara) |
| 191 | | * YBR264C (from Compara) |
| 192 | | * YDL159W (from Compara) |
| 193 | | * YDR006C (from Compara) |
| 194 | | * YDR294C (from Compara) |
| 195 | | * YDR466W (from Compara) |
| 196 | | * YPL051W (from Compara) |
| 197 | | * YOR212W (from Compara) not annotated to signalling |
| 198 | | * YGR152C (from Compara) |
| 199 | | * YKL092C (from Compara) not annotated to signalling |
| 200 | | * PDE2 YOR360C high affinity 3',5'-cAMP phosphodiesterase (family has human members, but no pombe member http://pfam.xfam.org/family/PF00233?type=Family#tabview=tab7) |
| 201 | | |
| 202 | | === Mitochondrial === |
| 203 | | |
| 204 | | * COX23 YHR116w http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13626 (has human) (no compara) |
| 205 | | * TOM6 YOR045W this paper links budding yeast to human, no pombe yet http://www.ncbi.nlm.nih.gov/pubmed/18331822 (no compara) |
| 206 | | |
| 207 | | === proteases === |
| 208 | | |
| 209 | | * YCR045C (from Compara) (REMOVE?) |
| 210 | | |
| 211 | | === proteasome assembly === |
| 212 | | |
| 213 | | * YGL004C (from Compara) |
| 214 | | |
| 215 | | === misc === |
| 216 | | move to above (in list) |
| 217 | | * YPC1 YBR183W paralog YDC1 (conserved in human ACER3) (no compara) |
| 218 | | * YDC1 YPL087W paralog YPC1 (conserved in human ACER3) (no compara) |
| 219 | | * SRN2 YLR119W Component of the ESCRT-I complex (no compara) |
| 220 | | * KXD1 YGL079W BLOC-1 complex (conserved in human KXD1) |
| 221 | | * SNN1 YNL086W BLOC-1 complex (conserved in human SNAPIN & BLOC1S6) |
| 222 | | === Unknown process === |
| 223 | | |
| 224 | | * AML1 YGR001C adenine methyltransferase, has human, (conserved in human N6AMT2) http://pfam.xfam.org/family/PF10237?type=Family#tabview=tab7 |
| 225 | | |
| 226 | | === Compara false positive === |
| 227 | | |
| 228 | | * YLR087C (Compara false positive - yeast specific protein) |
| 229 | | * YGR023W fugal sepecific (low complexity) |
| 230 | | * YMR068W false positive fungal only ankyrin repeat |
| 231 | | * YLR332W fungal only serine rich |
| 232 | | * YOR195W fungal only http://pfam.xfam.org/family/PF12709?type=Family#tabview=tab7 |
| 233 | | * YDR235W http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17204:SF23 |
| 234 | | * YNL016W http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24622:SF45 |
| 235 | | * YIR019C |
| 236 | | * YDR054C delete is conserved in pombe |
| 237 | | * YDR519W domain only, check |
| 238 | | * YML078W domain only, check |
| 239 | | * removed from list to here |
| 240 | | |
| 241 | | to check: |
| 242 | | * YDL122W candidate for pombe Ubp11 http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006:SF412 |
| 243 | | * YJL073W possible fp, dnaj |
| 244 | | * FPS1 YLL043W (not sure about this) |
| 245 | | |
| 246 | | |
