Changes between Version 100 and Version 101 of OrthologTableUpdates


Ignore:
Timestamp:
Aug 5, 2017, 3:29:48 PM (4 years ago)
Author:
vw253
Comment:

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  • OrthologTableUpdates

    v100 v101  
    55https://curation.pombase.org/pombase-trac/wiki/OrthologTableUpdates
    66
    7 SPAC3H1.02c -> add ortholog human PITRM1
    8 
    9 
    10 SPBC1685.06   human MTPAP and TUT1
    11 SPAC3A12.03c)  YBR062C
    12  SPAC57A7.09 E3  YBR062C
    13 
    14 
    15 
    16 * arz1 add now s.c and human orthologs to wiki https://github.com/pombase/curation/issues/1522
    17 * SPBC1861.10 human C1orf74 ortholog; db_xref=InterPro:IPR027850; date=20170521"
    18 * pop6???
    19 * SPAC589.03c-> caatt binding family
    20 * SPBPB2B2.18  YBL029C-A
    21 * vtc4 ->YDR098w
    22 * SPBC19G7.04 + human SPRTN + YGR196C
    23 * add YPR159W and YGR143W   orthologs  SPBP22H7.03
     7check relationship is really OK (PSI blast) and add
    248* ftm1 SPAC977.01 orthologous to S. cerevisiae YKL043W and YHL017W
    259* ftm2 SPAC977.02 orthologous to S. cerevisiae YKL043W and YHL017W
    … …  
    2913* ftm6 SPBC1348.03 orthologous to S. cerevisiae YKL043W and YHL017W
    3014* ftm7 SPBPB2B2.17c orthologous to S. cerevisiae YKL043W and YHL017W
     15
     16
     17
     18* SPAC3H1.02c -> add ortholog human PITRM1
     19* SPBC1685.06   human MTPAP and TUT1
    3120* SPCC1919.08c added human MRPL30
     21* SPBC13G1.01c removed human MRPS4
     22* SPBC13G1.01c human MRPS4 added in art
     23* SPBC1861.10 human C1orf74
     24
     25* arz1 add now s.c and human orthologs to wiki https://github.com/pombase/curation/issues/1522
     26* SPAC589.03c-> caatt binding family
     27* SPBPB2B2.18  YBL029C-A
     28* vtc4 ->YDR098w
     29* SPBC19G7.04 + human SPRTN + YGR196C
    3230* remove any "removed" genes
    33 * SPAC823.17 YOR045W (tom 6)
    34 * SPBC1921.05 added tma108
    35 * SPBC13G1.01c removed human MRPS4
    3631* SPAC18G6.09c add S.c ortholog YER035W and YGL222C, human ortholog PNRC2
    3732* tam14  added human ortholog SERP1 &2 added S. c ortholog YBR162W-A
    3833* curation tracker slk19 is alp7 ortholog? find evidence (not annotated)
    39 * human SPBC13G1.01c human MRPS4 added in art
    4034* ssr3 (SPAC23G3.10c) removed MDM2, and MDM4.  added SMARCD3 (Colm and EGGT00050000009846)
    41  * SPBC29A10.12 IPR010422 YGR169C-A YJR005C-A updated in artemis
    42  * SPAC890.02c alp7, cerevisiea candidate YOR195W IPR024312 (but is not know to be TACC family, following up with Pfam)
    43 
    44  
     35* SPBC29A10.12 IPR010422 YGR169C-A YJR005C-A updated in artemis
     36* SPAC890.02c alp7, cerevisiea candidate YOR195W IPR024312 (but is not know to be TACC family, following up with Pfam)
     37
     38
     39Already included in PomBase include in table
     40
    4541V 2.23
    46 * SPAC1F12.04c S. cerevisiae YOL147C
     42Already included in PomBase, DONE in table
     43* SPAC1F12.04c YOL147C
     44*  removed duplicate SPAC3C7.15c (synonym)  of   SPAC25A8.03c (systematic ID for entry)
     45* SPAC823.17 YOR045W (tom 6) 
     46* SPAC5H10.03  YKL128C (Panther:PTHR43387)
     47* SPAC513.02  YKL128C  (Panther:PTHR43387)
     48* SPBC1921.05 added tma108/YIL137C already has YHR047C|YKL157W
    4749* SPCC1442.05c added  YNL100W has YGR235C
    4850* SPBC15D4.11c removed YIL070C
    49  * SPAC513.02  YKL128C  (Panther:PTHR43387)
    50  * SPAC5H10.03  YKL128C (Panther:PTHR43387)
    51 DONE in table
    52  *  removed duplicate SPAC3C7.15c (synonym)  of   SPAC25A8.03c (systematic ID for entry)
    53 
    54 
    55 Not in PomBase, keep for student leads
     51* SPAC3A12.03c  YBR062C
     52* SPAC57A7.09 E3  YBR062C
     53* SPBP22H7.03  YPR159W and YGR143W   
     54* SPAC1805.18   YGR030C and YGR030C (pop6/7)
     55
     56Not yet in PomBase (need more work/validation), keep for student leads
    5657*  SPAC1F3.06c (spo15) and  SPAC1486.04c alm1 possible SPO21
    5758*  SPAC23H3.15c YMR173W a small c term region is conserved SMGDKMKGNMEKMAGKLTRDPELVQKGEDLKTG 
    … …  
    6061* SPAPB1E7.11c very low similarity to S. cerevisiae YFR046C (haven't been able to get anything solid for this one yet, and  functionally it doesn't make much sense)
    6162* SPBC1271.01c candidate YMR094W (F-box)
     63human examples extending fungal only
     64* SPAC823.17 YOR045W (tom 6)   just Googling  for "human TOM6" https://www.ncbi.nlm.nih.gov/pubmed/18331822 (Gives TOM5 as well!)
     65
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