Changes between Version 100 and Version 101 of OrthologTableUpdates
- Timestamp:
- Aug 5, 2017, 3:29:48 PM (4 years ago)
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OrthologTableUpdates
v100 v101 5 5 https://curation.pombase.org/pombase-trac/wiki/OrthologTableUpdates 6 6 7 SPAC3H1.02c -> add ortholog human PITRM1 8 9 10 SPBC1685.06 human MTPAP and TUT1 11 SPAC3A12.03c) YBR062C 12 SPAC57A7.09 E3 YBR062C 13 14 15 16 * arz1 add now s.c and human orthologs to wiki https://github.com/pombase/curation/issues/1522 17 * SPBC1861.10 human C1orf74 ortholog; db_xref=InterPro:IPR027850; date=20170521" 18 * pop6??? 19 * SPAC589.03c-> caatt binding family 20 * SPBPB2B2.18 YBL029C-A 21 * vtc4 ->YDR098w 22 * SPBC19G7.04 + human SPRTN + YGR196C 23 * add YPR159W and YGR143W orthologs SPBP22H7.03 7 check relationship is really OK (PSI blast) and add 24 8 * ftm1 SPAC977.01 orthologous to S. cerevisiae YKL043W and YHL017W 25 9 * ftm2 SPAC977.02 orthologous to S. cerevisiae YKL043W and YHL017W … … 29 13 * ftm6 SPBC1348.03 orthologous to S. cerevisiae YKL043W and YHL017W 30 14 * ftm7 SPBPB2B2.17c orthologous to S. cerevisiae YKL043W and YHL017W 15 16 17 18 * SPAC3H1.02c -> add ortholog human PITRM1 19 * SPBC1685.06 human MTPAP and TUT1 31 20 * SPCC1919.08c added human MRPL30 21 * SPBC13G1.01c removed human MRPS4 22 * SPBC13G1.01c human MRPS4 added in art 23 * SPBC1861.10 human C1orf74 24 25 * arz1 add now s.c and human orthologs to wiki https://github.com/pombase/curation/issues/1522 26 * SPAC589.03c-> caatt binding family 27 * SPBPB2B2.18 YBL029C-A 28 * vtc4 ->YDR098w 29 * SPBC19G7.04 + human SPRTN + YGR196C 32 30 * remove any "removed" genes 33 * SPAC823.17 YOR045W (tom 6)34 * SPBC1921.05 added tma10835 * SPBC13G1.01c removed human MRPS436 31 * SPAC18G6.09c add S.c ortholog YER035W and YGL222C, human ortholog PNRC2 37 32 * tam14 added human ortholog SERP1 &2 added S. c ortholog YBR162W-A 38 33 * curation tracker slk19 is alp7 ortholog? find evidence (not annotated) 39 * human SPBC13G1.01c human MRPS4 added in art40 34 * ssr3 (SPAC23G3.10c) removed MDM2, and MDM4. added SMARCD3 (Colm and EGGT00050000009846) 41 * SPBC29A10.12 IPR010422 YGR169C-A YJR005C-A updated in artemis 42 * SPAC890.02c alp7, cerevisiea candidate YOR195W IPR024312 (but is not know to be TACC family, following up with Pfam) 43 44 35 * SPBC29A10.12 IPR010422 YGR169C-A YJR005C-A updated in artemis 36 * SPAC890.02c alp7, cerevisiea candidate YOR195W IPR024312 (but is not know to be TACC family, following up with Pfam) 37 38 39 Already included in PomBase include in table 40 45 41 V 2.23 46 * SPAC1F12.04c S. cerevisiae YOL147C 42 Already included in PomBase, DONE in table 43 * SPAC1F12.04c YOL147C 44 * removed duplicate SPAC3C7.15c (synonym) of SPAC25A8.03c (systematic ID for entry) 45 * SPAC823.17 YOR045W (tom 6) 46 * SPAC5H10.03 YKL128C (Panther:PTHR43387) 47 * SPAC513.02 YKL128C (Panther:PTHR43387) 48 * SPBC1921.05 added tma108/YIL137C already has YHR047C|YKL157W 47 49 * SPCC1442.05c added YNL100W has YGR235C 48 50 * SPBC15D4.11c removed YIL070C 49 * SPAC513.02 YKL128C (Panther:PTHR43387) 50 * SPAC5H10.03 YKL128C (Panther:PTHR43387) 51 DONE in table 52 * removed duplicate SPAC3C7.15c (synonym) of SPAC25A8.03c (systematic ID for entry) 53 54 55 Not in PomBase, keep for student leads 51 * SPAC3A12.03c YBR062C 52 * SPAC57A7.09 E3 YBR062C 53 * SPBP22H7.03 YPR159W and YGR143W 54 * SPAC1805.18 YGR030C and YGR030C (pop6/7) 55 56 Not yet in PomBase (need more work/validation), keep for student leads 56 57 * SPAC1F3.06c (spo15) and SPAC1486.04c alm1 possible SPO21 57 58 * SPAC23H3.15c YMR173W a small c term region is conserved SMGDKMKGNMEKMAGKLTRDPELVQKGEDLKTG … … 60 61 * SPAPB1E7.11c very low similarity to S. cerevisiae YFR046C (haven't been able to get anything solid for this one yet, and functionally it doesn't make much sense) 61 62 * SPBC1271.01c candidate YMR094W (F-box) 63 human examples extending fungal only 64 * SPAC823.17 YOR045W (tom 6) just Googling for "human TOM6" https://www.ncbi.nlm.nih.gov/pubmed/18331822 (Gives TOM5 as well!) 65 62 66 63 67