Changes between Version 136 and Version 137 of OrthologTableUpdates


Ignore:
Timestamp:
Oct 30, 2018, 9:05:35 PM (3 years ago)
Author:
vw253
Comment:

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Unmodified
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  • OrthologTableUpdates

    v136 v137  
    88* human tom5
    99
    10 YJR056C is SPAC6B12.14c
    11 
    1210tpt1
    1311/controlled_curation="term=orthologous to S. cerevisiae YOL102C; qualifier=SPAC2C4.12c,N-term; date=20180310"
     
    2119* yhb1 YNL234W added anyway but:
    2220* mic19/25 - pombe mic19
    23 * Byr4 YJR053W
    24 * fmd2 YDL168W
    25 * dpm2 - cerevisiae YIL102C-A
    2621* SPBC947.10  rnf145  dsc1=rnf145    http://pfam.xfam.org/family/PF13705
    27 * SPBC21.07c YKL198C YJR059W
    2822
    2923http://www.flyrnai.org/cgi-bin/DRSC_orthologs.pl?input_species=4896&output_species=0&additional_filter=None&search_fields=***&search_datasets=***&gene_list=SPBC947.10
     
    3933* mic25 human CHCHD3 and CHCHD6 ortholog; db_xref=PMID:26477565; date=20180223"
    4034* Lam1,2,3
    41 
    42 
    43 = some distant  human ortholog table updates from 54 upto 29th August 2017  (not all?) =
    44 
    45 
    46 
    4735*rsc7
    4836*rsc9
     37
     38= some distant  human ortholog table updates from 54 upto 29th August 2017  (not all?) =
     39
     40
     41
     42
     43
     44
     45= V 2.23  pombe cerevisiae ortholog table updates, added to table (already in artemis/pombase) =
     46
     47*  removed duplicate SPAC3C7.15c (synonym)  of   SPAC25A8.03c (systematic ID for entry)
     48* SPAC5H10.03  YKL128C (Panther:PTHR43387)
     49* SPAC513.02  YKL128C  (Panther:PTHR43387)
     50* SPBC1921.05 added tma108/YIL137C already has YHR047C|YKL157W
     51* SPCC1442.05c added  YNL100W (already has YGR235C)
     52* SPBC15D4.11c removed YIL070C
     53* SPAC57A7.09 YBR062C
     54* SPBP22H7.03  YPR159W and YGR143W   
     55* SPAC1805.18   YGR030C and YGR030C (pop6/7)
     56* SPCC1322.14c YDR098w (already has VTC4 YJL012C)
     57
     58Systematic ID   Name    S. cerevisie    Product description
     59* SPAC7D4.03c   ahk1    AHK1(YDL073W)   scaffold protein, MAP kinase signalling pathway, Ahk1
     60* SPAC890.02c   alp7    SLK19(YOR195W)TACC protein Alp7  IPR024312
     61* SPCC1494.03   arz1    BEM4(YPL161C)   human RAP1 GTPase-GDP dissociation stimulator ortholog, Zfs1 target number 1
     62* SPAC977.08    ayr2    AYR1(YIL124W)   1-acyl DHAP reductase Ayr2 (predicted)
     63* SPAC9E9.05    bsp1    BSP1(YPR171W)   synaptojanin to cortical actin cytoskeletal adaptor Bsp1 (predicted)
     64* SPAC222.10c   byr4    BFA1(YJR053W)   two-component GAP Byr4
     65* SPBC21B10.11  dpm2    (YIL102C-A)     (dolichol-phosphate mannosyltransferase regulatory subunit Dpm2 (predicted)
     66* SPAC18G6.09c  edc1    EDC2(YER035W)|EDC1(YGL222C) Dcp2-Dcp1 mRNA-decapping complex subunit Edc1 PMID:27354705
     67* SPBC1198.01   fmd2    SFA1(YDL168W)   glutathione-dependent formaldehyde dehydrogenase Fmd2
     68* SPBC28F2.11   hmo1    HMO1(YDR174W)   HMG box protein Hmo1
     69* SPBC3B8.10    ina17   INA17 (YPL099C) mitochondrial F1-FO ATPase synthase peripheral stalk assembly factor Ina17 (predicted)
     70* SPAC3A12.03c  meu34   (YBR062C) ubiquitin-protein ligase E3 Meu34, human RNF13 family homolog, unknown biological role (predicted)
     71* SPBC1773.09c  mug184  JJJ2(YJL162C)   DNAJ domain protein, exocytosis associated Mug184 (predicted)
     72* SPBP35G2.11c  nbr1    ATG19(YOL082W)  cargo receptor for selective autophagy pathway
     73* SPAC589.03c   noc12   MAK21(YDR060W)  CCAAT-binding factor, Noc1 related
     74* SPAC823.17    tom6    TOM6(Y0R045W)   mitochondrial TOM complex subunit Tom6 (predicted)
     75* SPAC1805.18   pop6    YBR167C(POP6)|YGR030C(POP7)   RNase P and RNase MRP subunit Pop6/Pop7 ortholog
     76* SPAC869.02c   yhb1    YHB1(YGR234W)   nitric oxide dioxygenase Yhb1
     77* SPCC330.20    tam14   YSY6(YBR162W-A) stress associated Endoplasmic Reticulum protein Tam14
     78* SPAC1952.15c  rec24   MEI4(YER044C-A) meiotic recombination protein Rec24
     79* SPBC21.07c    ppk24   PTK1(YKL198C)|PTK2(YJR059W)   serine/threonine protein kinase Ppk24
     80* SPBC32C12.03c ppk25   KIN1(YDR122W)|KIN2(YLR096W)   serine/threonine protein kinase Ppk25 (predicted)
     81* SPBC11B10.05c rsp1    JJJ2(YJL162C) random septum position protein, DNAJ domain protein Rsp1
     82* SPAC1782.03   saf3    SPP381(YBR152W) splicing associated factor Saf3
     83* SPAC1F12.04c          PEX11(YOL147C)  peroxisomal protein Pex11 paralog (predicted)
     84* SPAC3A11.04   sei1    SEI1(YLR404W)   seipin, lipid droplet associated protein Sei1 (predicted)
     85* SPBC19G7.04   spr1    FYV8(YGR196C)   DNA-protein crosslink removal protease (predicted) PANTHER:PTHR23099
     86* SPCC1442.13c  sqs2    SQS1(YNL224C) R3H and G-patch domain protein Sqs2
     87* SPAC6B12.14c          (YJR056C) conserved fungal protein
     88* SPBC15C4.06c          (YBR062C) ubiquitin-protein ligase E3 Meu34, human RNF13 family homolog, unknown biological role (predicted)
     89* SPAP8A3.13c           (YGR066C)       Vid24 family protein (predicted)
     90* SPBC887.02            GEF1(YJR040W) ClC chloride channel (predicted)
     91* SPBC25D12.06          MRH4(YGL064C) mitochondrial ATP-dependent RNA helicase (predicted)
     92* SPBPB2B2.18           (YBL029C-A)  conserved fungal plasma membrane protein
     93* SPBP22H7.03   sbg1    SKN1(YGR143W)|KRE6(YPR159W) plasma membrane-actinomyosin ring linker protein Sbg1
     94* SPCC1840.07c          (YNL217W)   vacuolar endopolyphosphatase (predicted)
     95* SPCC757.05c           DUG2(YBR281C) peptidase family M20 protein involved in glutathione catabolism (predicted)
     96
     97== DISTANT HUMAN ORTHOLOGS =
     98
    4999* SPAC3H1.02c human PITRM1
    50100* SPBC1685.06   human MTPAP and TUT1
     
    59109* ssr3 (SPAC23G3.10c) removed MDM2, and MDM4.  added SMARCD3 (Colm and EGGT00050000009846)
    60110
    61 = V 2.23  pombe cerevisiae ortholog table updates, added to table (already in artemis/pombase) =
    62 * SPBC3B8.10    YPL099C new gene
    63 * SPAC1F12.04c YOL147C
    64 *  removed duplicate SPAC3C7.15c (synonym)  of   SPAC25A8.03c (systematic ID for entry)
    65 * SPAC823.17 YOR045W (tom 6) 
    66 * SPAC5H10.03  YKL128C (Panther:PTHR43387)
    67 * SPAC513.02  YKL128C  (Panther:PTHR43387)
    68 * SPBC1921.05 added tma108/YIL137C already has YHR047C|YKL157W
    69 * SPCC1442.05c added  YNL100W (already has YGR235C)
    70 * SPBC15D4.11c removed YIL070C
    71 * SPAC3A12.03c  YBR062C
    72 * SPAC57A7.09 YBR062C
    73 * SPBP22H7.03  YPR159W and YGR143W   
    74 * SPAC1805.18   YGR030C and YGR030C (pop6/7)
    75 * SPBPB2B2.18  YBL029C-A
    76 * SPCC1322.14c YDR098w (already has VTC4 YJL012C)
    77 * SPCC330.20(tam14)  YBR162W-A
    78 * SPAC589.03c YDR060W
    79 * SPCC1494.03 YPL161C
    80 * SPBC19G7.04 YGR196C  PANTHER:PTHR23099
    81 * SPAC18G6.09c add YER035W and YGL222C  PMID:27354705
    82 * SPAC890.02c(alp7 )YOR195W IPR024312
    83 
    84 
    85 
    86 
    87111
    88112= human orthologs version 48 - 54 =