Changes between Version 92 and Version 93 of OrthologTableUpdates


Ignore:
Timestamp:
Jun 26, 2017, 10:07:44 AM (3 years ago)
Author:
vw253
Comment:

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  • OrthologTableUpdates

    v92 v93  
    22
    33
    4 
    5 ftm1 SPAC977.01 orthologous to S. cerevisiae YKL043W and YHL017W
    6  
    7 ftm2 SPAC977.02 orthologous to S. cerevisiae YKL043W and YHL017W
    8 
    9  ftm3 SPAC750.04 orthologous to S. cerevisiae YKL043W and YHL017W
    10 
    11  ftm4 SPAC750.05 orthologous to S. cerevisiae YKL043W and YHL017W
    12 
    13  ftm5 SPBC1348.02 orthologous to S. cerevisiae YKL043W and YHL017W
    14 
    15  ftm6 SPBC1348.03 orthologous to S. cerevisiae YKL043W and YHL017W
    16 
    17  ftm7 SPBPB2B2.17c orthologous to S. cerevisiae YKL043W and YHL017W
    18 
    19 
    20 
    21 SPCC1919.08c added human MRPL30
    224
    235= candidates for next version =
    246
    25 SPBC19G7.04 + human SPRTN + YGR196C
    26 add YPR159W and YGR143W as test  orthologs  SPBP22H7.03
     7
    278
    289for next manual update
    2910https://curation.pombase.org/pombase-trac/wiki/OrthologTableUpdates
    3011
    31  SPAC1F12.04c S. cerevisiae YOL147C
    32 
    33 remove any "removed" genes
    34 
    35  SPAC823.17 YOR045W (tom 6)
    36 
    37 SPBC1921.05 added tma108
    38 
    39 SPBC13G1.01c removed human MRPS4
    40 
    41 SPAC18G6.09c add S.c ortholog YER035W and YGL222C, human ortholog PNRC2
    42 
    43 tam14  added human ortholog SERP1 &2 added S. c ortholog YBR162W-A
    44 curation tracker slk19 is alp7 ortholog? find evidence (not annotated)
    45 
    46 human SPBC13G1.01c human MRPS4 added in art
    47 human
    48 ssr3 (SPAC23G3.10c) removed MDM2, and MDM4.  added SMARCD3 (Colm and EGGT00050000009846)
    49 
    50 SPBC1271.01c candidate YMR094W
    51 
    52 SPAC3C7.15c (synonym) should be replaced by
    53 SPAC25A8.03c (systematic ID)
    54 
    55 SPBC15D4.11c removed YIL070C
    56 
    57 SPCC1442.05c added  YNL100W has YGR235C
    58 
    59 SPBC29A10.12 IPR010422 YGR169C-A YJR005C-A updated in artemis
     12* SPBC19G7.04 + human SPRTN + YGR196C
     13* add YPR159W and YGR143W   orthologs  SPBP22H7.03
     14* ftm1 SPAC977.01 orthologous to S. cerevisiae YKL043W and YHL017W
     15* ftm2 SPAC977.02 orthologous to S. cerevisiae YKL043W and YHL017W
     16* ftm3 SPAC750.04 orthologous to S. cerevisiae YKL043W and YHL017W
     17* ftm4 SPAC750.05 orthologous to S. cerevisiae YKL043W and YHL017W
     18* ftm5 SPBC1348.02 orthologous to S. cerevisiae YKL043W and YHL017W
     19* ftm6 SPBC1348.03 orthologous to S. cerevisiae YKL043W and YHL017W
     20* ftm7 SPBPB2B2.17c orthologous to S. cerevisiae YKL043W and YHL017W
     21* SPCC1919.08c added human MRPL30
     22*  SPAC1F12.04c S. cerevisiae YOL147C
     23* remove any "removed" genes
     24* SPAC823.17 YOR045W (tom 6)
     25* SPBC1921.05 added tma108
     26* SPBC13G1.01c removed human MRPS4
     27* SPAC18G6.09c add S.c ortholog YER035W and YGL222C, human ortholog PNRC2
     28* tam14  added human ortholog SERP1 &2 added S. c ortholog YBR162W-A
     29* curation tracker slk19 is alp7 ortholog? find evidence (not annotated)
     30* human SPBC13G1.01c human MRPS4 added in art
     31* ssr3 (SPAC23G3.10c) removed MDM2, and MDM4.  added SMARCD3 (Colm and EGGT00050000009846)
     32 * SPBC1271.01c candidate YMR094W
     33 * SPAC3C7.15c (synonym) should be replaced by
     34 * SPAC25A8.03c (systematic ID)
     35 * SPBC15D4.11c removed YIL070C
     36 * SPCC1442.05c added  YNL100W has YGR235C
     37 * SPBC29A10.12 IPR010422 YGR169C-A YJR005C-A updated in artemis
    6038 * SPAPB1E7.11c very low similarity to S. cerevisiae YFR046C (haven't been able to get anything solid for this one yet)
    6139 *  SPAC890.02c alp7, cerevisiea candidate YOR195W IPR024312 (but is not know to be TACC family, following up with Pfam)