wiki:OrthologTableUpdates

Version 3 (modified by val_wood, 8 years ago) (diff)

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Version 2.17

SPAC17G8.12 YER008C from PMID:22768263

SPBC16C6.01c YDR257C (faster evolving duplicate)

SPCC417.07c YAL047C PF12808

SPAC17G8.03c removed YBR278W from PMID:15388803, added YER159c based on http://www.treefam.org/cgi-bin/TFinfo.pl?ac=TF313964 and others

SPCC16C4.22 added YBR278W based on http://www.treefam.org/cgi-bin/TFinfo.pl?

SPAC24H6.13 removed YMR266W PSI Blast and homologene

SPBC354.08c added YMR266W PSI Blast and homologene

SPAC12G12.15 added YDR282C (already has YDL001W)

SPCC16C4.01 added YDR282C (already has YDL001W)

SPAC977.14c added YPL088W from http://www.treefam.org/cgi-bin/TFinfo.pl?ac=TF324563

SPCC895.07 added YLR045C from http://www.treefam.org/cgi-bin/TFinfo.pl?ac=TF105639

SPAC16A10.03c YMR231W http://www.treefam.org/cgi-bin/TFinfo.pl?ac=TF300479

SPBC32H8.07 removed YOR212W

SPCC1902.01 YFL021W from http://www.treefam.org/cgi-bin/TFinfo.pl?ac=TF315391

SPCC757.15 YML129C

SPAC25G10.03 added YIR017C already has YNL013W

SPAC6B12.16 YBR076W see Pfam:PF14616;

SPAC1486.05 removed YKL068W and YMR047C (Only have one domain in common) still has YGL092W

SPAC6F6.16c added YIL009C-A from Pfam:PF10341

Version 2.16

Additions

SPBC947.14c YBR120C (pers. comm. Nathalie Bonnafoy)

SPCC663.11 YBR194W; PMID:21386897

SPBC14F5.02 YGR166W (Pfam:PF12735)

SPAC1751.04 YFR001W (gene structure update enabled detection of ortholog)

SPAPB17E12.06 YPL255W (gene structure update enabled detection of ortholog)

SPBC215.04 YJR086W (not functional orthologs)

SPBC32H8.07 YOR212W (not functional orthologs)

SPCC16C4.20c YDL002C (PSI blast and functional correspondence Ino80 complex)

SPCC1020.13c added YOR022c

SPAC1006.01 added YOR003W (already has YEL060C) (from Compara)

SPAC4A8.04 added YOR003W (already has YEL060C) (from Compara)

SPAC277.14 added YFR007W removed YNL129W (from Compara)

SPAC12B10.14c removed YHL007C

SPAC1F5.09c removed YHL007C added YOL113W and YNL278W (from Compara)

SPAC3G6.05 removed YLR251W added YOR292c (from Compara)

SPAC664.06 removed YGL076C|YPL198W added YNL002C

SPBC1685.07c added YIL088C (from Compara)

SPCC285.11 added YDL091C (already has YML013W) (from Compara)

SPCC970.03 added YKL150W (already had YIL043C|YML125C|YML087C)

SPAC17H9.12c removed YKL150W added YOR037W

SPBC713.11c added YDL123W and YJL151C (already has YDR276C)

SPCC1183.09c added YDL123W and YJL151C (already has YDR276C)

SPBC577.15C YLL022C

SPBC32H8.07 YOR212W

SPCC1682.11C YOR161C

SPAC458.04C YMR299C

SPBC1271.14 YMR062C

SPAC3A12.02 added YMR267W

SPAC23C11.05 added YBR011C

SPAC1002.05c added YJR119C removed YMR176W

SPBC18H10.17c removed YKL167C added YDR296W (this was correct in the database but wrong in the table)

New genes

SPBC19G7.19 YPR133W-A PMID:21511999

SPAC977.18 YBL029C-A PMID:21511999

SPCC663.18 YER180C-A PMID:21511999

SPBC460.01c YBR068C|YBR069C|YCL025C|YDR046C|YDR508C|YEL063C|YGR191W|YKR039W|YNL268W
YNL270C|YOL020W|YOR348C|YPL265W

(PMID:18727152)

SPBC460.02c YGR201C|YKL081W|YPL048W (PMID:18727152)

SPBC460.03 YBR293W|YMR088C (PMID:18727152)

SPBC460.04c YLL057C (PMID:18727152)

SPBC460.05 YJR152W|YLR004C (PMID:18727152)

SPAC12G12.17 YJL205C

SPAC1486.11 YIL098C

SPAC15A10.17 YPL189C-A

SPAC167.09 YNL158W

SPAC1952.04c YBL029C-A

SPAC1B3.21 YJL062W-A

SPAC1F7.14c YDL157C

SPAC22F3.15 YOR215C

SPAC23H4.21 YLR407W

SPAC25H1.10c YOL077W-A

SPAC3F10.19 YLR437C

SPAC4D7.14 YGL108C

SPAC4F10.22 YMR194C-B

SPAC6B12.19 YLR221C

SPBC1604.25 YER058W

SPBC1711.18 YBR122C

SPBC21B10.14 YFR049W

SPBC24C6.13 YMR244C-A

SPBC25H2.18 YDR231C

SPBC2F12.17 YMR256C

SPBC30D10.21 YDR493W

SPBC4.07c YDL007W

SPBC409.23 YLR099W-A

SPBC530.16 YNL024C-A

SPBC887.22 YJR010C-A

SPBC8D2.23 YNL122C

SPBC8E4.12C YGR146C

SPCC1183.12 YKR092C

SPCC162.01C NONE

SPCC162.02C NONE

SPCC162.03 NONE

SPCC162.04C NONE

SPCC162.05 YOL096C

SPCC162.06C YDR486C

SPCC162.07 YDL161W|YLL038C|YLR206W

SPCC162.08C YIL149C|YKR095W

SPCC162.09C YLR450W|YML075C

SPCC162.10 NONE

SPCC162.11C YNR012W

SPCC162.12 YPL180W

SPCC4B3.20 YKL137W

SPBC2F12.17 YMR256C

SPBP35G2.16C YGR146C

Split clusters

SPAC17A2.14|SPBC27B12.12C. YOL130W |YKL064W split to SPAC17A2.14 YKL064W AND SPBC27B12.12C. YOL130W

SPBC577.13|SPBC2G2.02 YNL106C|YOL065C|YIL002C split to SPBC577.13 YIL002C and SPBC2G2.02 YNL106C (from Compara checked with clustal)

SPAC22E12.13c|SPCC330.14c|SPACUNK4.13c YGL031C|YGR148C|YLR009W split to SPAC22E12.13c YLR009W and SPCC330.14c YGL031C|YGR148C and SPAC6G9.09c YGL031C|YGR148C (from Compara checked with clustal)

SPAC23H4.01c|SPBC2F12.05c YAR042W|YDL019C|YHR073W split to SPAC23H4.01c YHR073W andSPBC2F12.05c YAR042W|YDL019C (from Compara checked with clustal) SPBC3D6.06c |SPCC1620.06C| SPAC4A8.14 YHL011C|YER099C|YBL068W|YOL061W|YKL181W split to SPBC3D6.06c YOL061W and SPCC1620.06C YHL011C|YER099C|YBL068W and SPAC4A8.14 YKL181W (from Compara checked with clustal)

SPACUNK4.13c|SPAC27E2.03c YHL014C|YBR025C split cluster: SPACUNK4.13c YHL014C and SPAC27E2.03c YBR025C (from Compara checked with clustal)

SPAC3A12.02|SPAC23C11.05 split to (looked likely from phenotype analysis)

Removed

SPCC645.12 NONE (removes YNR010W/med9)

SPBC409.06 remove YJR099W (uch1 still has YJR099W, uch2/SPBC409.06 is lost from S.cerevisie) PMID:20838651

SPAC22A12.06c removed YOR280C (N teem of Dfr1, see additions)