wiki:PhenotypeImportExportFormats

Version 21 (modified by val_wood, 10 years ago) (diff)

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DatatypeExampleCardinalityInput format requirementExport format requirement
Gene systematic ID SPCPB16A4.03c 1 (single gene) >1 (multigene) See 1 mandatory mandatory
Gene name ade100 or greateroptionaloptional
Allele name ade10-10 or 1 optionaloptional
Allele description e.g deletion, overexpression or See 2 1 (single gene) >1 (multigene) See 1 mandatory mandatory
Allele synonymade101 See 3 0 or greater optionaloptional
FYPO IDFYPO:0000000 1 mandatory mandatory
Evidence codecell growth assay See 41 mandatory mandatory
Condition at high temperature See 51 mandatory mandatory
Penetrance %, range%, or small CV (did we say high/low)?0 or 1optional optional
  1. Cardinality is one for single genes, >1 for multigenes. Q How should these be separated ? comma/pipe? need to be able to combine with allele description to make genotype, so should be colinear?
  1. https://sourceforge.net/apps/trac/pombase/wiki/DescribingResidues
  1. If the user wants to submit an alternative name for an allele
  1. ECO subset
  1. Currently a list, will be a vocabulary http://sourceforge.net/apps/trac/pombase/wiki/PhenotypeConditions