wiki:PhenotypeTests

List any potential phenotype consistency checks

e.g.

  • Only mutants with phenotype A and B should have GO term C
  • All mutants with phenotype A and B should have phenotype term C
  • mutants with only phenotype A should not have GO term x unless also have phenotype B etc.
  • queries for inviability
    • same allele/conditions combination can't be annotated to both viable cell and inviable cell
    • same allele/conditions combination can only be annotated to viable cell population and inviable cell if the inviable cell annotation has a penetrance extension (and the extension doesn't say "full/100%")
    • see if any cut are annotated as "viable" and then check if the correct penetrance qualifier is added
    • see which elongated vegetative aspetate are viable /inviable and check corretc penetrance qualifiers
Last modified 4 months ago Last modified on Feb 15, 2021, 8:12:02 PM