Changes between Version 7 and Version 8 of PhenotypeTests


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Timestamp:
Aug 12, 2013, 12:55:37 PM (7 years ago)
Author:
gomidori
Comment:

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  • PhenotypeTests

    v7 v8  
    1010
    1111 * Should all mutant alleles which have both increased DNA content and decreased DNA content should have unequal chromosome segregation too?
    12    * Only one annotation to both at present check after V 33
     12  * Only one annotation to both at present check after V 33
    1313 * should all mutant alleles that are multiseptate (cell phenotype) also have increased septation index (population phenotype)? (I'm not sure...what if incomplete penetrance?)
     14  * My gut feeling is that you can't infer either way -- multiseptate is about number of septa per cell and says nothing about the population, whereas increased septation index is about how much of a population is septating and says nothing about whether the septating cells have one or more septa.
    1415
    1516 * queries for inviability
    16    * see if any cut are annotated as "viable" and then check if the correct penetrance qualifier is added
    17    * see which elongated vegetative aspetate are viable /inviable and check corretc penetrance qualifiers
     17  * same allele/conditions combination can't be annotated to both viable cell and inviable cell
     18  * same allele/conditions combination can only be annotated to viable cell population and inviable cell if the inviable cell annotation has a penetrance extension (and the extension doesn't say "full/100%")
     19  * see if any cut are annotated as "viable" and then check if the correct penetrance qualifier is added
     20  * see which elongated vegetative aspetate are viable /inviable and check corretc penetrance qualifiers