Things to test for each release
Check that each item works and/or is displayed as expected.
Gene Pages
Check each section; pka1 has examples of almost everything listed. TO DO: Fill in other genes as examples for anything not on pka1 page.
- Sequence download section working (protein, DNA etc)
- References resolve correctly
- All ontology sections: check extension display
- ontology terms (GO, SO, etc.) show term name, hyperlinked appropriately, and with ID in mouseover
- Ste11 has SO and PR and genes linked, mal1 links to chebi, trx1 has PR: in phenotype)
- correct relation displayed (e.g. input_for should only appear in Target Of section)
- pombe gene name hyperlinked to gene page (systematic ID displayed only for genes that don't have standard names)
- ontology terms (GO, SO, etc.) show term name, hyperlinked appropriately, and with ID in mouseover
- GO
- ensure NOT annotations are not included in totals or in slim (for example rae1 NOT mitotic spindle assembly checkpoint vs regulation of mitotic cell cycle slim term)
- 'with' column entries link correctly
- Protein family data rendered correctly
- Are protein family labels present?
- Has anything new appeared in this section?
- check orthologs
- for example SPBC21B10.05c MLST8
- check that data from a new curation session has gone in
- V41 - http://curation.pombase.org/pombe/curs/87ce105a27640d77/ro/
- V46 - PMID:14596912
- V47 - http://curation.pombase.org/pombe/curs/3c4b277977998eee/ro/
- V55 - PMID:25417108
- V56 - http://curation.pombase.org/pombe/curs/897ea00b9e24c756/ro
- check that data from a new phaf has gone in
- V42 - PMID_16169489_phaf
- V46 - PMID_20625380_phaf.tsv
- V47 - PMID_21340088_phaf.tsv PMID_24727291_phaf.tsv
- V57 15821139
- check for other annotations types
- V58 - GEO dataset external ref on atf1 page "WT overexpression expression profiling; db_xref=GEO:GSE71820""
- TO DO: Fill in additional things to look for here
Browser
- Comparative data displayed sensibly
- Check that each track type 'nucleosome positioning' 'polyA' etc are working
- Sensible track labels
- Multiple alignment viewer works for Compara trees
Website (static and autogenerated pages)
- GO slim is present and updated
- Advanced query is functioning
- GO querying (and that numbers agree with slim)
- FYPO querying working
- Motif search working
Download data
- check that all of the downlaod files on the ftp site are i) archived ii) updated correctly
- spot check some file contents
Last modified 5 years ago
Last modified on Feb 29, 2016, 1:27:43 PM