wiki:PombasePlanningMeetingAgenda20111003

Version 1 (modified by gomidori, 9 years ago) (diff)

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Agenda

Review of Action Items 15th August

  • CC Midori and Val on all Jira items (Dan/Mark??)
  • Alert curators when current dataset ready for testing (Mark)
  • Set up a phenotype meeting to describe phenotype model (input from Val/ Midori/Kim?)
    • DONE See this meeting Agenda below
  • Need to coordinate dataset for public release with Ensembl genomes release (Kim/Mark/Dan?)
  • FYPO will be submitted to OBO foundry shortly which should trickle through to OLS in due course (Midori)
  • Ensembl group tell us which format specification for various HTP datasets (Dan/Paul/Mark??)
  • Load external GO data into Chado as a priority (Kim)
    • GO data is now loaded, but filters are not implemented (complicated by annotation extensions. Kim will prioritise this when he starts back in October)
  • Follow up desktop sharing software (circulate possibilities, do free trial?) (MIdori)
  • check university standard providers of conference lines etc with Gos (Val) (DONE) Gos has a BT MeetMe?? account
  • Organise fortnightly conference call (DONE)
  • Ask Henning Hermjakob about possibility of OLS as webservice to attach annotations to (?)
  • Finish NAR paper (All)
    • DONE

Agenda Items

  • Midori will present phenotype model for Chado
  • including what information will be stored in the allele record
  • annotation genotypes (we can currently capture information for single deletions only)
  • Annotation extensions
    • circulate proposal for reformatting this data on the gene pages
  • Discuss confusing menu options in Ensembl view.
  • seems odd to have links to data types we will not have
  • things which will be curated on the gene pages:
    • external references
      • general Identifiers
      • oligo probes (what is this in the context of an external ref?)
    • regulation (what will be under here?)
    • ontology
    • protein information
    • EBI protein summary
    • protein structure (external link)
    • ID history (Ids are stable, what would this show?)
  • similar issue with "downloads"

  • Usage statistics, where can we view these?
  • Critical items for "preview" announced, running alongside GeneDB.

(Need to be logged in to Jira)

Midori has been doing lots of testing, reporting, tidying static pages

This will enable us to submit final requests/fixes before encouraging community use (without GeneDB redirecting) but at this stage we will:

  • i) Announce to community for feedback
  • ii) Add links from GeneDB for people to try new site
  • iii) Send out a request for HTP datasets from the community in defined formats (current assembly only at first, this covers most HTP data)
  • Curator meeting deadlines for submitting papers (Oct 15) and abstracts (Nov 30).

http://pir.georgetown.edu/biocuration2012.html/instructions.html