Changes between Version 16 and Version 17 of PombasePlanningMeetingAgenda20130318


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Timestamp:
Mar 18, 2013, 6:46:38 PM (9 years ago)
Author:
gomidori
Comment:

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  • PombasePlanningMeetingAgenda20130318

    v16 v17  
    1919   * AI Kim to check if citexplore (references?) can be put into Chado in order to speed up loading (out of date)
    2020   * AI Mark to run checks to find out the exact loading times (done see below)
    21    * AI Dan and Mark to see what files downloadable from PomBase have previously been generated by ensembl. These should be easy to create automatic updates for (In progress?)
     21   * AI Dan and Mark to see what files downloadable from !PomBase have previously been generated by ensembl. These should be easy to create automatic updates for (In progress?)
    2222   * AI Val and Kim to see what files Kim could write some code to generate automatically in order to get regular updates (postpoed, will be done as part of Ensembl pipeline)
    2323
     
    4242 * Poly A sites (Juan Mata) Bam files? GFF with score
    4343
    44  We want to put dome documentation up about what users need to do
     44 We want to put s!ome documentation up about what users need to do
    4545
    4646
     
    105105|| cellular_component                 ||  211 ||
    106106|| biological_process                 ||  838 ||
    107 ||PomBase annotation extension terms ||1448 ||
     107||!PomBase annotation extension terms ||1448 ||
    108108|| fission_yeast_phenotype            ||  3519 ||
    109109||Total                               || 6260 ||
     
    116116 == Phenotype Ontology ==
    117117
    118  * ???? phenotype terms
     118 * 2000 phenotype terms
    119119 * anything else
    120120 
     
    149149
    150150
    151  * 28 Feb-1 March GO cell cycle ontology content meeting ( GO (MGI/TAIR/FlyBase/PomBase/Uniprot and Jacky Hayles/ Takashi TOda and Rob De Bruin)
     151 * 28 Feb-1 March GO cell cycle ontology content meeting ( GO (MGI/TAIR/FlyBase/PomBase/Uniprot and Jacky Hayles/ Takashi Toda and Rob De Bruin)
    152152    * Massive cell cycle overhaul, many changes to terms and annotations, many will be through for version 34/35, will improve cell cycle representation (10% of  S. p gene products)
    153153    * VW writing report and paper