Changes between Version 5 and Version 6 of PombasePlanningMeetingAgenda20131009


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Timestamp:
Oct 8, 2013, 6:13:57 AM (7 years ago)
Author:
val_wood
Comment:

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  • PombasePlanningMeetingAgenda20131009

    v5 v6  
    4747
    4848 == Chado ==
     49
     50  Kim  add a summary of changes (loader for phenotype screens etc)
    4951 
    5052
     
    5254
    5355 http://tinyurl.com/7qs2zap
     56
     57  *  Corrupted stats EVERY month
    5458
    5559 == Versioning ==
     
    6165 == Phenotype ontology ==
    6266
     67 Midori add summary numbers
     68
    6369 == Canto ==
     70
     71 Kim add summary update
    6472
    6573 == Other general issues ==
     
    7179 === Update on community curation ===
    7280
    73  ===  Literature (triage) status ===
     81 * Good quality curation, usually improving for  second papers
     82 * Some users providing annotation extensions
     83
     84  ===  Literature (triage) status ===
    7485 
    75 ||Item||March meeting||April meeting|| May meeting || July 3||
    76 ||All publications||9755||9761||9773|| 9935 ||
    77 ||Un-triaged publications||0||4||2|| 1 ||
    78 ||Curatable publications||4735||4740|| 4780|| 4877 ||
    79 ||Publications with Approved sessions||580||600|| 647|| 674||
    80 ||Publications with active sessions||245||247|| 265|| 249||
    81 ||Publications with session needing approval||14||4|| 4||16||
    82 || community curatable publications ||- ||-||-|| 262 ||
    83 || community curated publications with approved sessions||- ||-||-|| 31 ||
     86||Item||March meeting||April meeting|| May meeting || July 3|| Aug 18|| Oct ??||
     87||All publications||9755||9761||9773|| 9935 ||9989|| 10025    ||
     88||Un-triaged publications||0||4||2|| 1 ||0 || 0  ||
     89||Curatable publications||4735||4740|| 4780|| 4877 || 4896 ||4909   ||
     90||Publications with Approved sessions||580||600|| 647|| 674|| 712|| 791  ||
     91||Publications with active sessions||245||247|| 265|| 249|| 246||  209 ||
     92||Publications with session needing approval||14||4|| 4||16|| 18||  35 ||
     93|| community curatable publications ||- ||-||-|| 262 ||351|| 385  ||
     94|| community curated publications with approved sessions||- ||-||-|| 31 || 58|| 80  ||
    8495
    8596 === Canto annotations (from 2013-??-??) ===
    8697
    87 ||name||March count||April count||May count||July count
    88 ||PSI-MOD||77||77||77||78
    89 ||molecular_function||167||173||182||204
    90 ||cellular_component||211||245||272||353
    91 ||biological_process||838||893||927||944
    92 ||!PomBase annotation extension terms||1448||1605||1651||1938
    93 ||fission_yeast_phenotype||3519||3820||3879||4464
    94 ||Total||6260||6813||6988||7981
     98||name||March count||April count||May count||July count||August||
     99||PSI-MOD||77||77||77||78||78||
     100||molecular_function||167||173||182||204||222||
     101||cellular_component||211||245||272||353||376||
     102||biological_process||838||893||927||944||975||
     103||fission_yeast_phenotype||3519||3820||3879||4464||4971||
     104||Total||4812||5208||5337||6043||6622||
    95105
    96106 === All annotation types ===
    97107
    98108||name||count
    99 ||DNA_binding_specificity||
    100 ||cat_act||
    101 ||ex_tools||
    102 ||subunit_composition||
    103 ||pathway||
    104 ||gene_ex||
    105 ||m_f_g||
    106 ||complementation||
    107 ||genome_org||
    108 ||misc||
    109 ||disease_associated||
    110 ||name_description||
    111 ||EC numbers||
    112 ||sequence||
    113 ||warning||
    114 ||!PomBase family or domain||
    115 ||PSI-MOD||
    116 ||!PomBase gene characterisation status||
    117 ||!PomBase gene products||
    118 ||molecular_function||
    119 ||biological_process||
    120 ||cellular_component||
    121 ||fission_yeast_phenotype||
    122 ||species_dist||
    123 ||!PomBase annotation extension terms||
    124 ||Total||
     109||      || DNA_binding_specificity               ||
     110||     || cat_act                               ||
     111||     || ex_tools                              ||
     112||     || pathway                               ||
     113||     || subunit_composition                   ||
     114||    || m_f_g                                 ||
     115||    || complementation                       ||
     116||    || genome_org                            ||
     117||    || misc                                  ||
     118||    || disease_associated                    ||
     119||    || name_description                      ||
     120||    || EC numbers                            ||
     121||    || sequence                              ||
     122||   || warning                               ||
     123||   || PomBase family or domain              ||
     124||   || PSI-MOD                               ||
     125||   || PomBase gene characterisation status  ||
     126||   || PomBase gene products                 ||
     127||   || molecular_function                    ||
     128||  || biological_process                    ||
     129||  || cellular_component                    ||
     130||  || fission_yeast_phenotype               ||
     131||  || species_dist                          ||
     132||  || gene_ex                               ||
     133||Total||  ******  ||
    125134
    126 (last month's total was )
     135Last month was 133102
     136
     137
     138
    127139
    128140== Next priorities ==