wiki:PombasePlanningMeetingAgenda20131009

Version 2 (modified by val_wood, 7 years ago) (diff)

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PomBase Planning Meeting 09 Oct 2013

Cambridge - Meeting Room ???, EBI

Action item review

Postponed Action Items

Outstanding action items carried forward from previous meeting

Action items from

  • AI: send instructions to Val about how to submit data to ftp site? (Mark)
  • AI: Sort out display of reciprocal interactions, this should be done post-chado (as part of loading into ensembl), at the moment they are just mirrored (?) so take care with assymetrical ones (Mark)
  • AI: find examples for phenotype graph relations missing (Val)
  • AI: do next step for SRA studies (Val)
  • AI: Discussion about grant, Preproposal deadline 2 Dec, arrange meeting with WT

New (and continuing) Agenda items

Hosting high throughput datasets

Priority Jira tickets

Chado

Usage stats

http://tinyurl.com/7qs2zap

Versioning

Website

Phenotype ontology

Canto

Other general issues

Helpdesk

Curation

Update on community curation

Literature (triage) status

ItemMarch meetingApril meeting May meeting July 3
All publications975597619773 9935
Un-triaged publications042 1
Curatable publications47354740 4780 4877
Publications with Approved sessions580600 647 674
Publications with active sessions245247 265 249
Publications with session needing approval144 416
community curatable publications - -- 262
community curated publications with approved sessions- -- 31

Canto annotations (from 2013-??-??)

nameMarch countApril countMay countJuly count
PSI-MOD77777778
molecular_function167173182204
cellular_component211245272353
biological_process838893927944
PomBase annotation extension terms1448160516511938
fission_yeast_phenotype3519382038794464
Total6260681369887981

All annotation types

namecount
DNA_binding_specificity
cat_act
ex_tools
subunit_composition
pathway
gene_ex
m_f_g
complementation
genome_org
misc
disease_associated
name_description
EC numbers
sequence
warning
PomBase family or domain
PSI-MOD
PomBase gene characterisation status
PomBase gene products
molecular_function
biological_process
cellular_component
fission_yeast_phenotype
species_dist
PomBase annotation extension terms
Total

(last month's total was )

Next priorities

Publications

Meetings

News and Outreach

Next planning meeting

AOB