Changes between Version 2 and Version 3 of PombasePlanningMeetingAgenda20140122


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Timestamp:
Jan 20, 2014, 4:35:13 PM (8 years ago)
Author:
val_wood
Comment:

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  • PombasePlanningMeetingAgenda20140122

    v2 v3  
    1818== Action items from Nov ==
    1919 
    20  AI: Ensembl to look toward a better format to represent data which is presented at the single nucleotide level and cannot be indexed
    21  AI: Mark put the contig/gene view above the above the data tracks
    22  AI: Mark to zoom out detail browser view once to include context around gene
    23  AI: MArk Add NCBI blast link with protein sequence submission side by side with ensembl blast (at least until a usable blast facility is available)
    24  AI: Midori to email to ask for data resubmissions (DONE).
    25  AI: Val to email Paco for nucleosome positioning data (DONE).
    26  AI: Val ask Paul Thomas /CJM to explain details of modular/LEGO annotation
    27  AI: Val to Summarize tasks need to be done for the grant proposal. 
     20 * AI: Ensembl to look toward a better format to represent data which is presented at the single nucleotide level and cannot be indexed
     21 * AI: Mark put the contig/gene view above the above the data tracks
     22 * AI: Mark to zoom out detail browser view once to include context around gene
     23 * AI: MArk Add NCBI blast link with protein sequence submission side by side with ensembl blast (at least until a usable blast facility is available)
     24 * AI: Midori to email to ask for data resubmissions (DONE).
     25 * AI: Val to email Paco for nucleosome positioning data (DONE).
     26 * AI: Val ask Paul Thomas /CJM to explain details of modular/LEGO annotation
     27 * AI: Val to Summarize tasks need to be done for the grant proposal. 
    2828
    2929
     
    3838
    3939  Quite a few datasets now uploaded ready to host
    40   Paco Antequera https://www.ebi.ac.uk/panda/jira/browse/PB-1680
    41   Nick Rhind, replication origins https://www.ebi.ac.uk/panda/jira/browse/PB-1513 have we got this?
    42   Jurg's polyA data https://www.ebi.ac.uk/panda/jira/browse/PB-1513
    43   Nick Rhind transcriptome https://www.ebi.ac.uk/panda/jira/browse/PB-1707
     40  * Paco Antequera https://www.ebi.ac.uk/panda/jira/browse/PB-1680
     41  * Nick Rhind, replication origins https://www.ebi.ac.uk/panda/jira/browse/PB-1513 have we got this?
     42  * Jurg's polyA data https://www.ebi.ac.uk/panda/jira/browse/PB-1513
     43  * Nick Rhind transcriptome https://www.ebi.ac.uk/panda/jira/browse/PB-1707
    4444 
    4545 == Priority Jira tickets ==
     
    4848  https://www.ebi.ac.uk/panda/jira/issues/?jql=project%20%3D%20PB%20AND%20resolution%20%3D%20Unresolved%20AND%20fixVersion%20%3D%20%22Chado%20v40%22%20ORDER%20BY%20priority%20DESC
    4949 
    50   We should go through these and assess 
     50  * We should go through these and assess 
    5151
     52  * Mark to explain drupal work
    5253 
    5354 == Chado ==
    5455 
     56  * Nothing of note
    5557
    5658 == Usage stats ==
    5759
    5860 http://tinyurl.com/7qs2zap
     61
     62  Nov 10859 unique users
     63  Dec  8512 unique users
    5964
    6065 == Versioning ==
     
    6368 == Website ==
    6469
    65 
    6670 == Phenotype ontology ==
    6771
    6872 == Canto ==
     73
     74  * Paper submitted
     75  * GMOD compliance granted
     76  * video preontation at GMOD meeting well received
     77  * presenting demo to some plant communities this week possibly?
     78
    6979
    7080 == Other general issues ==