Changes between Version 5 and Version 6 of PombasePlanningMeetingAgenda20140122


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Timestamp:
Jan 20, 2014, 5:26:42 PM (8 years ago)
Author:
val_wood
Comment:

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  • PombasePlanningMeetingAgenda20140122

    v5 v6  
    2929
    3030= New (and continuing) Agenda items =
     31
     32 * Kim asked if it is possible for every access to curation.pombase.org
     33to go (transparently) via an EBI server which could show a message if
     34sysbiol/oliver0 is offline (more detail from Kim)
     35
     36 * Are we still not doing somthing we are supposed to.
     37 (Re e-mail Mark was surprised about ne features appearing, I think we were supposed to give prior notice, biut I don't think there are procedures in place for this?
     38 
     39 * In noticed in a thread about gff3 specification
     40 "Can anyone think of a valid case where multiple feature lines might have
     41the same ID, but different SO types"
     42 "I've seen nasty GFF files which do this by having the same ID for
     43the gene and CDS records (etc), which I think is invalid and wrong"
     44...I think we do this (at least we have always used the same IDs for both historically)
     45
     46 * Problems with overnight synching of drupal site. Are these resolved?
     47
     48 * multiple alignment related
     49   * is it possble to generate alignements on the sequence set selected only
     50   * what is used to generate the multiple alignements?
     51
     52 *  UniProt trying to  generate uniprot -> pombase mappings using PomBAse, this is NOT going to work.
     53    ...Need to liaise with UniProt to figure out what they are trying to do.
     54   2 helpdesk tickets:
     55
     56
     57
     58
     59
    3160
    3261 * Speed