Changes between Version 5 and Version 6 of PombasePlanningMeetingAgenda201402


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Timestamp:
Jan 13, 2015, 7:32:33 PM (6 years ago)
Author:
vw253
Comment:

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  • PombasePlanningMeetingAgenda201402

    v5 v6  
    3939  * Display of wild strains, see previous minutes
    4040   * Need to discuss what we can feasibly display in the light of the volume and scope of the data
     41
     42  *  Do Ensembl have any plans how to handle  chromosome interaction data http://nar.oxfordjournals.org/content/42/20/12585.full
     43    * We had a little discussion about this and Mark suggested
     44       * In the supplementary file there is an image of the all against all for the likelihood of interaction. It would be possible to have a track that would be a frequency of interaction (irrespective of target), which could be displayed as a gradient track. Then have 3 tracks for each phase of the cell cycle that they analysed
     45       * Your other option would be a custom display on the PomBase site using a chord style diagram for regions using colour and thickness to represent the frequency of interaction between 2 positions (eg
     46Chr1:X0-X1==Chr1:Y0-Y1 or Chr1:A0-A1==Chr2:B0-B1). Then have a representation for each phase measured. This would have the advantage of representing a flattened 3D structure and act to give context to the user.
    4147   
    4248 == Hosting high throughput datasets ==