Changes between Version 13 and Version 14 of PombasePlanningMeetingAgendaNext


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Timestamp:
Nov 21, 2011, 10:51:41 AM (10 years ago)
Author:
gomidori
Comment:

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  • PombasePlanningMeetingAgendaNext

    v13 v14  
    11
     2 * Usage statistics, where can we view these?
    23
    3 = Agenda =
    4 
    5  == Review of Action Items 15th August ==
    6 
    7  * CC Midori and Val on all Jira items (Dan/Mark?)
    8 
    9  * Alert curators when current dataset ready for testing (Mark)
    10 
    11  * Set up a phenotype meeting to describe phenotype model (input from Val/ Midori/Kim)
    12    * DONE See this meeting Agenda below
    13 
    14  * Need to coordinate dataset for public release with Ensembl genomes release (Kim/Mark/Dan)
    15 
    16  * FYPO will be submitted to OBO foundry shortly which should trickle through to OLS in due course (Midori)
    17 
    18  * Ensembl group tell us which format specification for various HTP datasets (Dan/Paul/Mark?)
    19 
    20  * Load external GO data into Chado as a priority (Kim)
    21    * GO data is now loaded, but filters are not implemented (complicated by annotation extensions. Kim will prioritise this when he starts back in October)
    22 
    23  * Annotate telomere features (Curation group)
    24    * NO progress, not a priority at present
    25    * Transferred to SF tracker https://sourceforge.net/tracker/?func=detail&aid=3407281&group_id=65526&atid=2096387
    26 
    27  * Follow up desktop sharing software (circulate possibilities, do free trial?) (MIdori)
    28 
    29  * check university standard providers of conference lines etc with Gos (Val) (DONE) Gos has a BT MeetMe? account
    30 
    31  * Organise fortnightly conference call (DONE)
    32 
    33  * Ask Henning Hermjakob about possibility of OLS as webservice to attach annotations to (?)
    34 
    35  * Finish NAR paper (All)
    36    * DONE
    37 
    38  == Agenda Items ==
    39 
    40 
    41  * Midori will present phenotype model for Chado
    42 
    43     * including what information will be stored in the allele record
    44     * annotation genotypes (we can currently capture information for single deletions only)
    45 
    46  * Annotation extensions
    47     * circulate proposal for reformatting this data on the gene pages
    48 
    49  * Discuss confusing menu options in Ensembl view.
    50 
    51    * seems odd to have links to data types we will not have
    52    * things which will be curated on the gene pages:
    53       * external references
    54         * general Identifiers
    55         * oligo probes (what is this in the context of an external ref?)
    56       * regulation (what will be under here?)
    57       * ontology
    58       * protein information
    59       * EBI protein summary
    60       * protein structure (external link)
    61       * ID history (Ids are stable, what would this show?)
    62 
    63    *  similar issue with "downloads"     
    64      
    65 
    66 
    67  * Usage statistics, where can we view these?
    68 
    69  * Critical items for "preview" announced, running alongside GeneDB.
    70     (Need to be logged in to Jira)
    71    Midori has been doing lots of testing, reporting, tidying static pages
    72    * Mark has closed a whopping 139 Jira items
    73      http://www.ebi.ac.uk/panda/jira/secure/IssueNavigator.jspa?reset=true&pid=10280&status=6
    74     Now only have 16 "critical" OR "blocker"
    75     * http://www.ebi.ac.uk/panda/jira/secure/IssueNavigator.jspa?reset=true&pid=10280&priority=1&resolution=-1
    76     * http://www.ebi.ac.uk/panda/jira/secure/IssueNavigator.jspa?reset=true&pid=10280&priority=2&resolution=-1
    77     * Question, if not happened already, when will we move to EG 11, this should fix a  lot...
    78 
    79 
    80 This will enable us to submit final requests/fixes before encouraging community use (without GeneDB redirecting) but at this stage we will:
    81 
    82      * i) Announce to community for feedback
    83      * ii) Add links from GeneDB for people to try new site
    84      * iii) Send out a request for HTP datasets from the community in defined formats (current assembly only at first, this covers most HTP data)
    85 
    86 
    87 *  Curator meeting deadlines for submitting papers (Oct 15) and abstracts (Nov 30).
    88 http://pir.georgetown.edu/biocuration2012.html/instructions.html
    89 
    90 
    91 
     4 * Amigo2 demo