wiki:PombasePlanningMeetingAgendaNext

Version 21 (modified by val_wood, 10 years ago) (diff)

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Tasks before preview removed

Tasks before GeneDB decommissioned

Ensembl related

  • Displaying users data

http://www.ebi.ac.uk/panda/jira/browse/PB-501?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel

  • Blast related
  • Integration (Better integration between the Ensembl part of the site and the Gen pages) especially
  • Linking between the browser and the gene pages (discuss button option etc)
  • curator contact
  • tools
  • helpdesk
  • download
  • If not resolved
    • Showing data on tracks e.g. ESTs cryptic

Advanced query related

General

  • Usage statistics, where can we view these?
  • FAQ in drupal

Misc

  • Amigo2 demo

Need to contact Chris and Seth to make sure stable URL for meeting

Notes:Amigo2 is generic and can support other ontologies To get the cool axial, drill down search/filtering working it involved the use of Solr indexes? which need to be built but Chris says it should be relatively straightforward to implement. This should fulfill our requirements which are not met by other available tools (i.e the ability to provide links to gene product at different levels of the heirarchy). It also handles x-products..... I'll put this for discussion, demo at a future planning meeting. (Quickgo issues include different gene product names and IDs only protein not representing all annotation how are term names displayed and accessed update frequency )

  • useability issues reported
    • problems switching on tracks (like ESTs)
  • revisit online meeting software?
  • pombelist posting from Bioneer
  • OriDB