wiki:PombasePlanningMeetingAgendaNext

Version 30 (modified by val_wood, 10 years ago) (diff)

--

Tasks before preview removed

Tasks before GeneDB decommissioned

Ensembl related

  • Displaying users data

http://www.ebi.ac.uk/panda/jira/browse/PB-501?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel

  • Integration (Better integration between the Ensembl part of the site and the Gen pages) especially

when tracks are enabled they will be visible on gene page context map

Advanced query related

General

  • Usage statistics, where can we view these?
  • FAQ in drupal
  • Versioning, need somewhere where we can see which ensembl amnd which Chado data vesion is currently displayed on dev and www

Misc

  • useability issues reported
    • problems switching on tracks (like ESTs)
  • pombelist posting from Bioneer
  • OriDB
  • curation tool sub domain (Kim)
  • User configuration of gene pages. Briefly discuss options

http://www.ebi.ac.uk/panda/jira/browse/PB-259?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=40772#action_40772

Lower priority so bump to next meeting ?

  • Re visit Online Meeting software
  • Amigo2 demo

Need to contact Chris and Seth to make sure stable URL for meeting

Notes:Amigo2 is generic and can support other ontologies To get the cool axial, drill down search/filtering working it involved the use of Solr indexes? which need to be built but Chris says it should be relatively straightforward to implement. This should fulfill our requirements which are not met by other available tools (i.e the ability to provide links to gene product at different levels of the heirarchy). It also handles x-products..... I'll put this for discussion, demo at a future planning meeting. (Quickgo issues include different gene product names and IDs only protein not representing all annotation how are term names displayed and accessed update frequency )