Changes between Version 3 and Version 4 of PombasePlanningMeetingMinutes20130703


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Timestamp:
Jul 4, 2013, 12:17:34 AM (8 years ago)
Author:
antonialock
Comment:

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  • PombasePlanningMeetingMinutes20130703

    v3 v4  
    33
    44  Cambridge - Meeting Room B, Sanger Building
    5 Present: Steve, Paul, Dan, Mark, Midori, Val, Antonia [[BR]]
     5Present: Steve, Paul, Dan, Mark, Midori, Val, Antonia
    66Remote: Kim
    77
     
    7979Midori points out that the release generates ‘everything’ and ‘simplified’ versions. OLS is the simplest or a simple version. Mark says that OLS is not the one we load but he is not sure what version we use.
    8080
    81 AI: relationships for graph generation
    82  * AI: Mark to tell Midori which version we load.
    83  * AI: Midori to tell Mark which one we should use.
    84  * AI: curators to document what relations we want to show
    85  * AI: Mark looks into making the graphs show them
     81 * AI: relationships for graph generation
     82  * AI: Mark to tell Midori which version we load.
     83  * AI: Midori to tell Mark which one we should use.
     84  * AI: curators to document what relations we want to show
     85  * AI: Mark looks into making the graphs show them
    8686
    8787 === Keeping front page news current ===
     
    174174== New Action Items ==
    175175
    176 * AI: Document how to submit data to ftp directory (what file format for what data-types.  Using accession numbers or uploading data files, genome assembly date, PMID) (curators?)
     176 * AI: Document how to submit data to ftp directory (what file format for what data-types.  Using accession numbers or uploading data files, genome assembly date, PMID) (curators?)
    177177  * sub-AI: FAQ item to document what GFF3 is (curators)
    178178  * sub-AI: Short term solution = Change form from ‘submit data’ to something that lets people point us to the data + describes the data types at the source (genome version…). Make this in more of an ‘advert’ style format. Rename the link. (Midori)
    179 * AI: Need to document how users can visualize their data privately (who?)
    180 * AI: Search SRA for pombe (related to mapping of short reads?) (jira ticket created) (DAN)
     179 * AI: Need to document how users can visualize their data privately (who?)
     180 * AI: Search SRA for pombe (related to mapping of short reads?) (jira ticket created) (DAN)
    181181 * Chado future long term flag, reinstate pre-cached ‘others’ column that links to page where all genes are shown. (who, Jira?)
    182182 * Change gene page order to GO MF BP CC phenotype
     
    189189 * Kim to check if reciprocal interactions are reciprocally represented in chado? (Kim)
    190190 * check with Kim if we can make the semi-automatic emails look like they come from a person rather than what it looks like now? (curators)
    191 
    192 
    193191
    194192