Changes between Version 7 and Version 8 of PombasePlanningMeetingMinutes20140122


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Timestamp:
Jan 22, 2014, 8:22:05 PM (8 years ago)
Author:
val_wood
Comment:

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  • PombasePlanningMeetingMinutes20140122

    v7 v8  
    2424== Collected Action items  Jan ==
    2525
    26  * AI: Monitor UniProt item on tracker, Ensembl will create mapping, Val will check https://www.ebi.ac.uk/panda/jira/browse/PB-1738
     26 * AI: Monitor !UniProt item on tracker, Ensembl will create mapping, Val will check https://www.ebi.ac.uk/panda/jira/browse/PB-1738
    2727 * AI: Re user gff query the new file appears to contian LTRs , UTRs and the correct number of CDS, Mark to  send file/ close ticket
    2828 * AI: Val circulate list of proposed PIs and other groups for support letters for additional suggestions. Draft letter
    29  * AI: Val, create a list of the Intermine  features which will be useful for PomBase users
     29 * AI: Val create a list of the Intermine  features which will be useful for PomBase users
    3030 * AI: Re gene page revisions to deal with increasng page length Val to a) document b) make mock ups b) ask for community feedback on proposal
    3131 * AI: Problem with Paco's data.  Mark to contact Paco/Luis/Ignacio
     
    3939
    4040 * Are we still not doing something we are supposed to?
    41  (Re e-mail Mark was surprised about new features appearing, I think we were supposed to give prior notice, but I don't think there are procedures in place for this?
     41 (Re e-mail Mark was surprised about new features appearing, we were supposed to give prior notice, are there are procedures in place for this?
    4242   * In future curators should curate a jira ticket to alert Mark when new features are created
    4343
    44  * In noticed in a thread about gff3 specification "Can anyone think of a valid case where multiple feature lines might have the same ID, but different SO types"
     44 * It was noticed in a thread about gff3 specification "Can anyone think of a valid case where multiple feature lines might have the same ID, but different SO types"
    4545   * This was just a heads up. We will revisit if it cuases problems
    4646 
     
    4848   * Seems OK right now, and Mark can now run the Crontab
    4949 
    50  * multiple alignment related
    51    * is it possble to generate alignements on the sequence set selected only
    52    * what is used to generate the multiple alignements?
     50 * Multiple alignment related
     51   * Is it possible to generate alignments on the sequence set selected only
     52   * What is used to generate the multiple alignments?
    5353    * In progress as a broader Ensembl item
    5454
    55  * UniProt trying to  generate uniprot -> pombase mappings using PomBAse, also see tickets #362843, #353760, #366965, and Val's email to pombase list from 21 Nov.
    56    * AI: Monitor UniProt item on tracker, Ensembl will create mapping, Val will check https://www.ebi.ac.uk/panda/jira/browse/PB-1738
     55 * UniProt trying to  generate uniprot -> pombase mappings using !PomBase, also see tickets #362843, #353760, #366965, and Val's email to pombase list from 21 Nov.
     56   * AI: Monitor !UniProt item on tracker, Ensembl will create mapping, Val will check https://www.ebi.ac.uk/panda/jira/browse/PB-1738
    5757 
    5858 * Query from a user we can't answer: "Resolved: definition of feature types" basically appear to be reporting problems with the gff file
     
    9191
    9292
    93  * Curators  and Mark . Document enhancements to existing gene page displays.
     93 * Curators and Mark. Document enhancements to existing gene page displays.
    9494   * Pages are getting VERY long (see mcm2 for e.g.)  have a proposal for page configuration  (cookies), and allowing users to toggle between:
    9595    a) concise (non-redundant biological summary) and complete (all terms, evidences and refs) of annotation views
    9696    b) Ability to sort data on all columns (terms alleles etc)
    9797
    98   AI: Re gene page revisions to deal with increasng page length Val to a) document b) make mock ups b) ask for community feedback on proposal
     98  AI: Re gene page revisions to deal with increasing page length Val to a) document b) make mock ups b) ask for community feedback on proposal
    9999 
    100100 * Curators, mockup of graphical display of modifications and mutations in sequence context
    101     * Paul showed us the Ensembl variation display which will largely do the trick.
     101    * Paul showed us the Ensembl variation display which looks largely suitable.
    102102    * We would additionally like to be able to  filter display for specific phenotypes of interest
    103103