Changes between Version 1 and Version 2 of PombasePlanningMeetingMinutes20141017


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Timestamp:
Oct 17, 2014, 5:38:24 PM (6 years ago)
Author:
vw253
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  • PombasePlanningMeetingMinutes20141017

    v1 v2  
    44AI  Val contact Paco
    55
    6 What is the status of trackhub?
     6What is the status of track-hub?
    77This will not happen in the near future,  will be done at some point in the future by Ensembl
    88AI  Create  jira ticket to ensure this is working correctly when it happens
    99
    1010What is the status of  on the fly multiple alignments from Compara (for gap squashing etc)
    11 AI Create jira ticket for PomBAse curatos to ensure this is working correctly when it comes through to PomBase
     11AI Create jira ticket for PomBase curators to ensure this is working correctly when it comes through to PomBase
    1212
    1313What is the status of storing ontology synonym scope in Ensembl
     
    2020
    2121What is the status of ensuring that Ensembl  ensuring that annotations are transitive over the "regulates" relationship for biological process?
    22 AI Somebody (who?) will create a ticket (where?). We will also need a PomABse jira tracker ticket for this to list the changes which will need to happen PomBAse side when this is in place (mainly  test on query builder and documentation)
     22AI Somebody (who?) will create a ticket (where?). We will also need a PomBase jira tracker ticket for this to list the changes which will need to happen PomBase side when this is in place (mainly  test on query builder and documentation)
    2323Discussion- if Ensembl do this in a generic/modular way it will also provide a solution for
    2424https://www.ebi.ac.uk/panda/jira/browse/PB-2027
     
    2626
    2727PomBase browser suggestions
    28 AI Paul will ensure that  PomABse browser suggestions are  forwarded to the new point person before browser overhaul begins
     28AI Paul will ensure that  PomBase browser suggestions are  forwarded to the new point person before browser overhaul begins
    2929
    30 Exporting FYPO and GO IDs in Genbank and  EMBL export files
     30Exporting FYPO and GO IDs in GenBank and  EMBL export files
    3131AI Dan will remove the PomBase IDs from this file
    3232
     
    3434AI  Mark will create jira ticket
    3535
    36 Q How long is a  PomBAse build taking from start to finish
     36Q How long is a  PomBase build taking from start to finish
    3737A Approximately 2-3 days. It takes about 0.5 days of  Mark's time
    3838
     
    4747AI Mark will contact authors with ftp upload details and check file formats
    4848
    49 Discussion about display of variation adn phenotypes for 50+ wild strins in Ensembl.
    50 AI  EG are keen to host this. Dan Jafferes will submit data.
     49Discussion about display of variation and phenotypes for 50+ wild strians in Ensembl.
     50AI  EG are keen to host this. Dan Jeffares will submit data.
    5151
    5252We spent some time going through Marks mockups of the compact view for phenotypes and GO.