Changes between Version 2 and Version 3 of PombasePlanningMeetingMinutes20141017


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Timestamp:
Oct 17, 2014, 5:41:10 PM (6 years ago)
Author:
vw253
Comment:

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  • PombasePlanningMeetingMinutes20141017

    v2 v3  
    22
    33What is the status of Paco's data?
    4 AI  Val contact Paco
     4 * AI  Val contact Paco
    55
    66What is the status of track-hub?
    77This will not happen in the near future,  will be done at some point in the future by Ensembl
    8 AI  Create  jira ticket to ensure this is working correctly when it happens
     8 * AI  Create  jira ticket to ensure this is working correctly when it happens
    99
    1010What is the status of  on the fly multiple alignments from Compara (for gap squashing etc)
    11 AI Create jira ticket for PomBase curators to ensure this is working correctly when it comes through to PomBase
     11 * AI Create jira ticket for PomBase curators to ensure this is working correctly when it comes through to PomBase
    1212
    1313What is the status of storing ontology synonym scope in Ensembl
    14 AI MArk will find out the details of the Bio-perl module that is used
    15 AI Val will contact author to see if synonym scope can be included
    16 AI  Ticket will be raised with Ensembl to include synonym scope when option is avaiable
     14 * AI Mark will find out the details of the Bio-perl module that is used
     15 * AI Val will contact author to see if synonym scope can be included
     16 * AI  Ticket will be raised with Ensembl to include synonym scope when option is avaiable
    1717
    1818What is the status of Sam's data
    19 AI  Ask Sam for feedback, Jurg will follow up with Sam
     19 * AI  Ask Sam for feedback, Jurg will follow up with Sam
    2020
    2121What is the status of ensuring that Ensembl  ensuring that annotations are transitive over the "regulates" relationship for biological process?
    22 AI Somebody (who?) will create a ticket (where?). We will also need a PomBase jira tracker ticket for this to list the changes which will need to happen PomBase side when this is in place (mainly  test on query builder and documentation)
     22 * AI Somebody (who?) will create a ticket (where?). We will also need a PomBase jira tracker ticket for this to list the changes which will need to happen PomBase side when this is in place (mainly  test on query builder and documentation)
    2323Discussion- if Ensembl do this in a generic/modular way it will also provide a solution for
    2424https://www.ebi.ac.uk/panda/jira/browse/PB-2027
     
    2626
    2727PomBase browser suggestions
    28 AI Paul will ensure that  PomBase browser suggestions are  forwarded to the new point person before browser overhaul begins
     28 * AI Paul will ensure that  PomBase browser suggestions are  forwarded to the new point person before browser overhaul begins
    2929
    3030Exporting FYPO and GO IDs in GenBank and  EMBL export files
    31 AI Dan will remove the PomBase IDs from this file
     31 * AI Dan will remove the PomBase IDs from this file
    3232
    3333Can centromere features be visible in the "detail view"