Changes between Version 3 and Version 4 of PombasePlanningMeetingMinutes20141017


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Timestamp:
Oct 17, 2014, 5:42:10 PM (6 years ago)
Author:
vw253
Comment:

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  • PombasePlanningMeetingMinutes20141017

    v3 v4  
    44 * AI  Val contact Paco
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    68What is the status of track-hub?
    79This will not happen in the near future,  will be done at some point in the future by Ensembl
    810 * AI  Create  jira ticket to ensure this is working correctly when it happens
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    1014What is the status of  on the fly multiple alignments from Compara (for gap squashing etc)
    1115 * AI Create jira ticket for PomBase curators to ensure this is working correctly when it comes through to PomBase
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    1319What is the status of storing ontology synonym scope in Ensembl
     
    1622 * AI  Ticket will be raised with Ensembl to include synonym scope when option is avaiable
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    1826What is the status of Sam's data
    1927 * AI  Ask Sam for feedback, Jurg will follow up with Sam
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    2131What is the status of ensuring that Ensembl  ensuring that annotations are transitive over the "regulates" relationship for biological process?
     
    2535but this might not be possible....
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    2739PomBase browser suggestions
    2840 * AI Paul will ensure that  PomBase browser suggestions are  forwarded to the new point person before browser overhaul begins
     
    3143 * AI Dan will remove the PomBase IDs from this file
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    3347Can centromere features be visible in the "detail view"
    3448AI  Mark will create jira ticket
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    3651Q How long is a  PomBase build taking from start to finish
    3752A Approximately 2-3 days. It takes about 0.5 days of  Mark's time
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    3955Q Should we be combining  experimental tracks for repeats in the  browser track displays
     
    4157AI Midori  Update any of the submission documentation http://www.pombase.org/submit-data/data-submission-form, and the wiki page which details track descriptions http://curation.pombase.org/pombase-trac/wiki/TrackRelabelling (note: I don't know if this is the right page, its the only one I could find)
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    4360EsyN, Val described that  various link outs will be needed from the "GO slim" and the physical and genetic interaction sections of the gene pages.
    4461AI Val will open a jira ticket once the teething problems are overcome and the URLs are available ( I will circulate for feedback first).
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    4664New high-throughput data, upcoming dataset from Runge lab
    4765AI Mark will contact authors with ftp upload details and check file formats
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    4968Discussion about display of variation and phenotypes for 50+ wild strians in Ensembl.
    5069AI  EG are keen to host this. Dan Jeffares will submit data.
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    5272We spent some time going through Marks mockups of the compact view for phenotypes and GO.