Changes between Version 12 and Version 13 of PombeGeneLosses


Ignore:
Timestamp:
Oct 3, 2014, 5:57:32 PM (6 years ago)
Author:
vw253
Comment:

--

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  • PombeGeneLosses

    v12 v13  
    2626  * SPS19 YNL202W SPAC922.06 http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24315:SF0 (no coompara)
    2727
    28 ==== Inositol ====
     28 ==== Inositol ====
    2929  * INM2 YDR287W (from Compara)
    3030  * INM1 YHR046C  (from Compara)
    3131  * INO1 YJL153C (from Compara)
    3232
    33 
    34   * DPL1 YDR294C (from Compara)
    35   * APT1 YLR118C (from Compara) depalmitolation
    36   * BTS1 YPL069C terpenoid
    37   * YPL103C N-acylethanomine
    38   * TAZ1 YPR140W TAfaZzin (human , TAZ)
    39  
    40 
    41  === TMA (translation machinery associated) ===
    42 
    43   * TMA64 YDR117C (human LGTN)
    44   * TMA7  YLR262C-A ribosome associated  (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with  tblastn
    45   * STF2 YGR008C  TMA10 paralog ( human SERBP1) (not  in compara list)
    46   * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1)  (not in compara list)
    47   *  YER176W
    48 
    49  === Nucleobase containing small molecule met  ===
    50 
    51   * YBR140C (from Compara)
    52   * YCR011C (from Compara)
    53   * YER155C (from Compara) check class
    54   * YIR027C (from Compara)
    55   * YKL088W (from Compara)
    56   * YKR072C (from Compara) CoA-synthesizing protein complex
    57   * YLR422W (from Compara)
    58  
    59   * YOL081W (from Compara)
    60   * YOR054C (from Compara)
    61   * YPR140W (from Compara)
    62 
    63   === Tryptophan degradation/ de novo NAD biosynthesis ===
     33 === Tryptophan degradation/ de novo NAD biosynthesis ===
    6434
    6535  * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (human HAAO)
     
    6838  * BNA5 YLR231C tryptophan met  kynureninase (human KYNU)
    6939  * BNA6 YFR047C biosynthesis of NAD from tryptophan via kynurenine  (human QPRT) (missing from compara)
    70 
    71   === Other cellular amino acid/derivative  metabolic process ===
    72  
    73   * YAL012W (from Compara)
    74   * YCL064C (from Compara)
    75   * YFL030W (from Compara)
    76   * YMR020W FMS1  (from Compara)
    77   * YNL040W possible FP (from Compara)
    78   * CYS4 YGR155W cystathionine beta-synthase (human CBS)
    79 
    80   ==== Urea metabolism ====
    81 
    82   * YBR208C (from Compara)
    83 
    84  === Carbohydrate metabolic process ===
    85 
    86   * YDL174C (from Compara)
    87   * YDR109C (from Compara)
    88   * YHR210C (from Compara)
    89   * YMR164C (from Compara)
    90   * YNR071C (from Compara)
    91   * YPR026W (from Compara)
    92 
     40 
    9341 ==== Glycogen metabolism ====
    9442
     
    10149  * GDB1 YPR184W glycogen debranching enzyme (human AGL)
    10250 
    103  ==== Glycerol metabolism ====
     51  ==== Glycerol metabolism ====
    10452
    10553  * GUT1 YHL032C  (from Compara)
    10654  * GPD2 YOL059W (from Compara)
    10755  * YHR104W (from Compara)  NOT ANNOTATED AS GLYEROL
     56
     57
     58
     59 === TMA (translation machinery associated) ===
     60
     61  * TMA64 YDR117C (human LGTN)
     62  * TMA7  YLR262C-A ribosome associated  (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with  tblastn
     63  * STF2 YGR008C  TMA10 paralog ( human SERBP1) (not  in compara list)
     64  * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1)  (not in compara list)
     65  *  YER176W
     66
     67 === Nucleobase containing small molecule met  ===
     68
     69  * YBR140C (from Compara)
     70  * YCR011C (from Compara)
     71  * YER155C (from Compara) check class
     72  * YIR027C (from Compara)
     73  * YKL088W (from Compara)
     74  * YKR072C (from Compara) CoA-synthesizing protein complex
     75  * YLR422W (from Compara)
     76  * YOL081W (from Compara)
     77  * YOR054C (from Compara)
     78  * YPR140W (from Compara)
     79
     80 
     81  === Other cellular amino acid/derivative  metabolic process ===
     82 
     83  * YAL012W (from Compara)
     84  * YCL064C (from Compara)
     85  * YFL030W (from Compara)
     86  * YMR020W FMS1  (from Compara)
     87  * YNL040W possible FP (from Compara)
     88  * CYS4 YGR155W cystathionine beta-synthase (human CBS)
     89
     90  ==== Urea metabolism ====
     91
     92  * YBR208C (from Compara)
     93
     94 === Carbohydrate metabolic process ===
     95
     96  * YDL174C (from Compara)
     97  * YDR109C (from Compara)
     98  * YHR210C (from Compara)
     99  * YMR164C (from Compara)
     100  * YNR071C (from Compara)
     101  * YPR026W (from Compara)
     102
     103 
    108104
    109105  === Transmembrane Transporters ===
     
    238234  * SNN1 YNL086W  BLOC-1 complex (conserved in human SNAPIN & BLOC1S6)
    239235  * YKR013W (from Compara)
     236
     237  * DPL1 YDR294C (from Compara)
     238  * APT1 YLR118C (from Compara) depalmitolation
     239  * BTS1 YPL069C terpenoid
     240  * YPL103C N-acylethanomine
     241  * TAZ1 YPR140W TAfaZzin (human , TAZ)
    240242 
    241243  === Unknown process ===