Changes between Version 18 and Version 19 of PombeGeneLosses


Ignore:
Timestamp:
Oct 3, 2014, 6:36:10 PM (6 years ago)
Author:
vw253
Comment:

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  • PombeGeneLosses

    v18 v19  
    3737  * INO1 YJL153C (from Compara)
    3838
    39  === Tryptophan degradation/ de novo NAD biosynthesis ===
     39 === Tryptophan degradation ===
    4040
    4141  * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (human HAAO)
     
    5656  * GPH1 YPR160W glycogen debranching enzyme (human PYGB)
    5757  * GDB1 YPR184W glycogen debranching enzyme (human AGL)
    58  
    59   ==== Glycerol metabolism ====
    60 
    61   * GUT1 YHL032C  (from Compara)
    62   * GPD2 YOL059W (from Compara)
    63   * YHR104W (from Compara)  NOT ANNOTATED AS GLYEROL
    64 
    65 
    66  === TMA (translation machinery associated) ===
    67 
    68   * TMA64 YDR117C (human LGTN)
    69   * TMA7  YLR262C-A ribosome associated  (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with  tblastn
    70   * STF2 YGR008C  TMA10 paralog ( human SERBP1) (not  in compara list)
    71   * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1)  (not in compara list)
    72   *  YER176W
    73 
    74 === Sulfur amino acid   metabolic process ===
     58
     59 === Sulfur amino acid   metabolic process ===
    7560 
    7661  * CYC3 YAL012W (from Compara)
     
    8166  * MUP1 YGR055W (from Compara) methionine transporter
    8267
    83 
    84 
    85 
    86 
    87 
    88 
    89 
    90 
     68  ==== Glycerol metabolism ====
     69
     70  * GUT1 YHL032C  (from Compara)
     71  * GPD2 YOL059W (from Compara)
     72  * YHR104W (from Compara)  NOT ANNOTATED AS GLYEROL
     73
     74
     75
     76
     77
     78
     79
     80
     81
     82
     83 === TMA (translation machinery associated) ===
     84
     85  * TMA64 YDR117C (human LGTN)
     86  * TMA7  YLR262C-A ribosome associated  (human TMA7) http://pfam.xfam.org/family/PF09072?type=Family#tabview=tab7 (no pombe family member) could not find with  tblastn
     87  * STF2 YGR008C  TMA10 paralog ( human SERBP1) (not  in compara list)
     88  * TMA10 YLR327C STF2 paralog ( conserved in human SERBP1)  (not in compara list)
     89  *  YER176W
    9190
    9291
     
    138137  * YPR021C (from Compara)
    139138  * YPR192W  AQY1 (from Compara)
    140 
    141139 * YLL052C AQY2
    142140 * YLL053C