Changes between Version 19 and Version 20 of PombeGeneLosses


Ignore:
Timestamp:
Oct 3, 2014, 6:55:30 PM (7 years ago)
Author:
vw253
Comment:

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Legend:

Unmodified
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  • PombeGeneLosses

    v19 v20  
    3737  * INO1 YJL153C (from Compara)
    3838
     39 === Ceramide ===
     40
     41  * YPC1 YBR183W paralog YDC1 (conserved in human ACER3) (no compara) ceramide
     42  * YDC1 YPL087W paralog YPC1  (conserved in human ACER3) (no compara) ceramide
     43  * DPL1 YDR294C (from Compara)  sphingolipid
     44
     45
     46
    3947 === Tryptophan degradation ===
    4048
    … …  
    7381
    7482
    75 
    76 
    77 
    78 
    79 
    80 
    81 
     83=== Transcription related ===
     84
     85==== Nitrogen catabolite repression/activation ====
     86
     87  * DAL1 YIR027C (from Compara)  nitrogen catabolite repression
     88  * DAL80 YKR034W (from Compara) nitrogen catabolite repression
     89  * GLN3  YER040W (from Compara)
     90
     91   * AVT1 YJR001C amino acid transporter, move closer to other cluster?
    8292
    8393 === TMA (translation machinery associated) ===
    … …  
    95105  * YCR011C (from Compara)
    96106  * YER155C (from Compara) check class
    97   * YIR027C (from Compara)
    98107  * YPR140W (from Compara)
    99108  * YLR422W (from Compara)
    … …  
    118127
    119128  * PFA4 YOL003C
    120   * AVT1 YJR001C
     129 
    121130  * AVT2 YEL064C
    122131  * FUN26 YAL022C (human SLC29A1,2,3,4)
    … …  
    154163  * YGR040W (from Compara)
    155164  * YJL056C (from Compara)
    156   * YER040W (from Compara)
    157   * YKR034W (from Compara)
    158165  * YKR099W (from Compara)
    159166  * YMR164C (from Compara)
    … …  
    238245 
    239246  *  move to above (in list)
    240   * YPC1 YBR183W paralog YDC1 (conserved in human ACER3) (no compara)
    241   * YDC1 YPL087W paralog YPC1  (conserved in human ACER3) (no compara)
    242   * SRN2 YLR119W Component of the ESCRT-I complex  (no compara)
     247 
     248  * YPC1 YBR183W paralog YDC1 (conserved in human ACER3) (no compara) ceramide
     249  * YDC1 YPL087W paralog YPC1  (conserved in human ACER3) (no compara) ceramide
     250  * DPL1 YDR294C (from Compara)  sphingolipid
     251
     252 * SRN2 YLR119W Component of the ESCRT-I complex  (no compara)
    243253  * KXD1 YGL079W BLOC-1 complex (conserved in human KXD1)
    244254  * SNN1 YNL086W  BLOC-1 complex (conserved in human SNAPIN & BLOC1S6)
    245255  * YKR013W (from Compara)
    246256
    247   * DPL1 YDR294C (from Compara)
     257 
    248258  * APT1 YLR118C (from Compara) depalmitolation
    249259  * BTS1 YPL069C terpenoid