Changes between Version 21 and Version 22 of PombeGeneLosses


Ignore:
Timestamp:
Oct 3, 2014, 7:06:02 PM (6 years ago)
Author:
vw253
Comment:

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  • PombeGeneLosses

    v21 v22  
    4343  * DPL1 YDR294C (from Compara)  sphingolipid
    4444
    45 
    46 
    47  === Tryptophan degradation ===
     45=== Amino acid ===
     46 ==== Tryptophan degradation ====
    4847
    4948  * BNA1 YJR025c tryptophan met 3-hydroxyanthranilate 3,4-dioxygenase activity (human HAAO)
     
    5352  * BNA6 YFR047C biosynthesis of NAD from tryptophan via kynurenine  (human QPRT) (missing from compara)
    5453 
     54==== Sulfur amino acid   metabolic process ====
     55 
     56  * CYC3 YAL012W (from Compara)
     57  * CHA1 YCL064C (from Compara)
     58  * AGX1 YFL030W (from Compara)
     59  * CYS4 YGR155W cystathionine beta-synthase (human CBS)
     60  * MUP3 YHL036W (from Compara) methionine transporter
     61  * MUP1 YGR055W (from Compara) methionine transporter
     62
     63
     64
    5565 === Carbohydrate metabolic process ===
    5666
     
    6575  * GDB1 YPR184W glycogen debranching enzyme (human AGL)
    6676
    67  === Sulfur amino acid   metabolic process ===
    68  
    69   * CYC3 YAL012W (from Compara)
    70   * CHA1 YCL064C (from Compara)
    71   * AGX1 YFL030W (from Compara)
    72   * CYS4 YGR155W cystathionine beta-synthase (human CBS)
    73   * MUP3 YHL036W (from Compara) methionine transporter
    74   * MUP1 YGR055W (from Compara) methionine transporter
    75 
     77 
    7678  ==== Glycerol metabolism ====
    7779
     
    8385=== Transcription related ===
    8486
    85 ==== Nitrogen catabolite repression/activation ====
     87 ==== Nitrogen catabolite repression/activation ====
    8688
    8789  * DAL1 YIR027C (from Compara)  nitrogen catabolite repression
     
    9092
    9193   * AVT1 YJR001C amino acid transporter, move closer to other cluster?
     94
     95 ==== Isw1 complx ====
     96
     97  * ISW1 YBR245C isw1-a/b  complex amily  confirmed by compara
     98  * ITC1  YGL133W isw1-a  complex (human BAZ1A,B) (no compara)
     99  * ISW2  YOR304W CHRAC complex family  confirmed by compara
     100  * YPL216W ITC1 paralog (uncharacterised) (human BAZ1A,B) (no compara)
     101  * GIS1 YGL096W (from Compara)
     102  * CMR1 YDL156W
     103
     104
     105
     106
     107
     108
     109
     110
    92111
    93112 === TMA (translation machinery associated) ===
     
    152171  ===  transcription and chromatin remodelleing complexes CHRAC and isw1-2 complexes ===
    153172
    154   * ITC1  YGL133W CHRAC complex isw1-a  complex (human BAZ1A,B) (no compara)
    155   * YPL216W ITC1 paralog (uncharacterised) (human BAZ1A,B) (no compara)
    156   * IOC3 YFR013W isw1-a (PWWP domain) (no compara REMOVE?)
    157   * IOC4 YMR044W isw1-b (PWWP domain) (no compara REMOVE?)
     173
    158174  * HHO1 YPL127C histone H1  (human  H1F0) 
    159175  * YCL055W (from Compara)
    160176  * YDR440W (from Compara)
    161   * YGL096W (from Compara)
    162177  * YGL254W (from Compara)
    163178  * YGR040W (from Compara)
     
    169184
    170185  == Chromosome organization ==
    171   * ISW1 YBR245C isw1-a/b  complex amily  confirmed by compara (FP?)
    172   * ISW2  YOR304W CHRAC complex family  confirmed by compara (FP?)
    173   * YDR096W (from Compara)
     186   * YDR096W (from Compara)
    174187  * HOS1 YPR068C (from Compara)
    175188
     
    245258 
    246259  *  move to above (in list)
    247  
    248   * YPC1 YBR183W paralog YDC1 (conserved in human ACER3) (no compara) ceramide
    249   * YDC1 YPL087W paralog YPC1  (conserved in human ACER3) (no compara) ceramide
    250   * DPL1 YDR294C (from Compara)  sphingolipid
    251260
    252261 * SRN2 YLR119W Component of the ESCRT-I complex  (no compara)
     
    266275  * YPL264C
    267276  * YGR127W
    268   * YDL156W
     277 
    269278  * YMR010W
    270279  * YNR066C