Changes between Version 25 and Version 26 of PombeGeneLosses


Ignore:
Timestamp:
Oct 3, 2014, 7:33:58 PM (6 years ago)
Author:
vw253
Comment:

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  • PombeGeneLosses

    v25 v26  
    178178  ===  transcription and chromatin remodelleing complexes CHRAC and isw1-2 complexes ===
    179179
    180 
    181    * DOT1 YDR440W (from Compara) histone methyltransferase activity (H3-K79 specific)
    182 
    183 
     180  * DOT1 YDR440W (from Compara) histone methyltransferase activity (H3-K79 specific)
    184181  * HHO1 YPL127C histone H1  (human  H1F0) 
    185182  * YCL055W (from Compara)
    186 
    187183  * YGL254W (from Compara)
    188184  * YGR040W (from Compara)
     
    192188  * YNL239W (from Compara)
    193189  * YPL177C (from Compara)
    194 
    195   == Chromosome organization ==
    196    * YDR096W (from Compara)
     190  * YDR096W (from Compara)
    197191  * HOS1 YPR068C (from Compara)
    198192
     
    261255 
    262256  *  move to above (in list)
    263 
    264  * SRN2 YLR119W Component of the ESCRT-I complex  (no compara)
     257  * SRN2 YLR119W Component of the ESCRT-I complex  (no compara)
    265258  * KXD1 YGL079W BLOC-1 complex (conserved in human KXD1)
    266259  * SNN1 YNL086W  BLOC-1 complex (conserved in human SNAPIN & BLOC1S6)
    267   * YKR013W (from Compara)
    268 
    269  
     260  * YKR013W (from Compara)
    270261  * APT1 YLR118C (from Compara) depalmitolation
    271262  * BTS1 YPL069C terpenoid
     
    274265 
    275266  === Unknown process ===
    276  
     267
    277268  * AML1  YGR001C adenine methyltransferase, has human, (conserved in human  N6AMT2) http://pfam.xfam.org/family/PF10237?type=Family#tabview=tab7
    278269  * YPL264C
    279270  * YGR127W
    280  
    281271  * YMR010W
    282272  * YNR066C
     
    285275  * YCR099C
    286276  * YCL028W
    287    * YMR034C
     277  * YMR034C
    288278  * YPL263C
    289279  * YER004W
     
    293283  * YFR016C
    294284  * YFR018C
    295  * YGR001C 
    296  * YHL021C
    297  *  YJL078C
    298  *  YJL079C
    299  * YMR114C
    300 * YMR110C
    301 
     285  * YGR001C 
     286  * YHL021C
     287  * YJL078C
     288  * YJL079C
     289  * YMR114C
     290  * YMR110C
    302291
    303292=== Compara false positive ===
     
    316305  * removed from list to here
    317306
    318 to check:
     307== to check: ==
    319308  * YDL122W candidate for pombe  Ubp11 http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006:SF412
    320309  * YJL073W possible fp, dnaj 
     
    322311  * YHR121W
    323312  * YJL068C
    324  * YJR151C
    325  * YBL064C
    326    * YIL112W (should have pombe)
    327  * YNL040W possible FP (from Compara)
    328  
     313  * YJR151C
     314  * YBL064C
     315  * YIL112W (should have pombe)
     316  * YNL040W possible FP (from Compara)
     317