wiki:PombeProIDs

This is an incomplete list of PRO IDs for specific forms of S. pombe proteins, for use in annotation extensions (e.g. GO "Column 16") and GO annotation "Column 17".

See the "mini-pro" ontology in the dropbox for a more complete set (but note that the file also contains non-pombe-specific ancestor PRO terms): Dropbox/pombase/ontologies/PR/pombe_mini_PR.obo

genemodificationGO annotationPRO ID for col17
sty1phosphorylated T171,Y173GO:0005634 (PMID:9251044 to be corrected)PR:000027503
cdc25phosphorylated S99,S192,S359GO:0005515 PMID:9774107 with=GeneDB_Spombe:SPAC8E11.02cPR:000027512
prz1unmodifiedGO:0005634 PMID:12637524PR:000027516
ase1unmodifiedGO:0005515 PMID:19686686 with=GeneDB_Spombe:SPBC15D4.01cPR:000027520
drc1phosphorylated T60,T74,S87,T99,T154GO:0005515 PMID:11937031 with=GeneDB_Spombe:SPAC23C4.18cPR:000027529
ste11phosphorylated T173,S218TO ADD: GO:0005515 with rad24, PMID:11702950PR:000027543
hta2phosphorylated S128GO:0006975 PMID:15226425PR:000027551
hta2phosphorylated S122GO:0034501 PMID:19965387PR:000027557
mrc1phosphorylated S604GO:0005515 PMID:14585996 with=GeneDB_Spombe:SPCC18B5.11cPR:000027613
mrc1unmodifiedCOULD ADD to GO:0000790 PMID:14585996PR:000027610
zip1phosphorylatedGO:0005515 PMID:15660136 with=GeneDB_Spombe:SPAC57A10.05cPR:000027619
mei2unmodifiedGO:0045836 PMID:9062192PR:000027583
clp1phosphorylatedS396,S408,S467,S468,S493,S513GO:0005515 PMID:16085489 with=GeneDB_Spombe:SPAC8E11.02cPR:000027629
hht1phosphorylated T4 (aka H3-pT3)GO:0005515 PMID:20929775 with=GeneDB_Spombe:SPCC962.02cPR:000027576
hht1methylated K10GO:0005515 PMID:11242054 with=GeneDB_Spombe:SPAC664.01cPR:000027578
hht2phosphorylated T4 (aka H3-pT3)GO:0005515 PMID:20929775 with=GeneDB_Spombe:SPCC962.02cPR:000027591
hht2methylated K10GO:0005515 PMID:11242054 with=GeneDB_Spombe:SPAC664.01cPR:000027593
klp9unmodifiedGO:0005515 PMID:19686686 with=GeneDB_Spombe:SPAPB1A10.09PR:000027705
hht3phosphorylated T4 (aka H3-pT3)GO:0005515 PMID:20929775 with=GeneDB_Spombe:SPCC962.02cPR:000027602
hht3methylated K10GO:0005515 PMID:11242054 with=GeneDB_Spombe:SPAC664.01cPR:000027604
myo2unmodifiedGO:0005515 PMID:15184401 with=GeneDB_Spombe:SPCC4B3.15PR:000027731
myo2unmodifiedGO:0000915 PMID:12589679PR:000027731


suc22GO:0005737; evidence=IDA PMID:12695334 [active complex]PR:000027714
suc22GO:0005634; evidence=IDA PMID:12695334 [inactive monomer? (not complex)]PR:000027720

updated 2013-04-15 MAH to note incompleteness & point to mini-ontology file

Last modified 7 years ago Last modified on Apr 15, 2013, 12:08:31 PM