wiki:PrePostComposePhenotype

Version 6 (modified by gomidori, 9 years ago) (diff)

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Page for things that will mature into guidelines for when to pre- or post-compose phenotype terms with condition information

Midori's initial thoughts (May 2012):

  • phenotypes to pre-compose:
    • any sensitive to chemical other than N or C source
    • any resistant to chemical other than N or C source
  • phenotype to post-compose (i.e. capture part of phenotype as conditions at annotation time)
    • anything other than viable/inviable (or growth/no growth/death) at high temperature
    • anything other than viable/inviable (or growth/no growth/death) at low temperature
  • ones I'm not sure about, but leaving in place until/unless problems crop up [updated 2013-01-07]
    • viable/inviable (or growth/no growth/death) on specific carbon source
    • anything during starvation for a specific nutrient/limiting [stuff]
    • growth at [whatever] pH, e.g. FYPO:0001157 increased cell growth rate at high pH
    • aerobic vs. anaerobic (e.g. SF 3535251, SF 3535252 )
  • Outstanding issue; no terms included yet (2013-01-07)

updated 2012-06-15, 2013-01-07 mah