Changes between Version 75 and Version 76 of PreviousCurationMeetings


Ignore:
Timestamp:
Feb 5, 2015, 7:25:38 PM (6 years ago)
Author:
vw253
Comment:

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  • PreviousCurationMeetings

    v75 v76  
    643643https://sourceforge.net/p/pombase/curation-tasks/258/
    644644
     645
     646
     647= 4/5 Feb 2015 =
     648
     649  * track ordering
     650       * https://www.ebi.ac.uk/panda/jira/browse/PB-2064
     651  Discussed and updated ticket
     652
     653 * Discussed ontology term page as landings for expression, updated SF ticket
     654
     655
     656Tidied tracker allele tickets
     657   * allele tickets on canto tracker  disambiguation so that nt is included in the allele name to disambiguate?
     658     * https://sourceforge.net/p/pombase/chado/253/
     659
     660 * Worked through all extension relations and decided usage 
     661    * https://sourceforge.net/p/pombase/chado/413/   
     662    * https://sourceforge.net/p/pombase/curation-tasks/488/
     663    * Do we want to keep a mechanism to say dependent_on/independent_of. Even though these dependencies are captured in the forward direction, some subtleties are lost without the extensions.
     664    * negated extensions ones etc
     665   Midori is making the relations configuration file ‘opt in’
     666
     667decided just to capture as turncation and flag as TEV-protease-system
     668 * How to capture phenotypes from PMID:15941470? Cdc23S424::Tcs allele has TEV cleavage site introduced after Ser424; TEV protease removes C-terminal 170 amino acids, so when TEV protease is expressed, you see what happens to the cell when Cdc23 is truncated. I've thought of three bad ways to annotate, and no good ways (details stashed in note-to-self file; some also in https://sourceforge.net/p/pombase/fission-yeast-phenotype/1870/). (mah)
     669