Protein feature annotation
- Protein features are currently annotated in Artemis. They will be added to Canto in the future.
- Syntax /controlled_curation="term=protein sequence feature, cleavage site; residue=K65-T66; db_xref=PMID:8314086; date=20120222"
Feature type
- cleavage site
- coiled-coil
- copper binding region
- DDB-box
- destruction box
- ER retention signal
- KEN box
- mitochondrial signal sequence
- N-terminal signal anchor
- N-terminal signal sequence
- NES
- NLS
- PIP box
- repeat containing
- transmembrane helices
- transmembrane helix
- vacuolar sorting signal
If you wish to annotate a feature which is not in this list you need to identify the SO protein feature ID and supply a mapping to (where? this might be part of the chado loader, so probably to Kim)
- residues can be specified using range see describing residues modified or mutated
- If specifying a cleavage site, then specify the two residues flanking the cleaved peptide bond
Last modified 6 years ago
Last modified on Jan 27, 2015, 3:36:36 PM