Protein feature annotation

• Protein features are currently annotated in Artemis. They will be added to Canto in the future.

• Syntax /controlled_curation="term=protein sequence feature, cleavage site; residue=K65-T66; db_xref=PMID:8314086; date=20120222"

Feature type

• cleavage site
• coiled-coil
• copper binding region
• DDB-box
• destruction box
• ER retention signal
• KEN box
• mitochondrial signal sequence
• N-terminal signal anchor
• N-terminal signal sequence
• NES
• NLS
• PIP box
• repeat containing
• transmembrane helices
• transmembrane helix
• vacuolar sorting signal

If you wish to annotate a feature which is not in this list you need to identify the SO protein feature ID and supply a mapping to (where? this might be part of the chado loader, so probably to Kim)

• residues can be specified using range see describing residues modified or mutated
• If specifying a cleavage site, then specify the two residues flanking the cleaved peptide bond