Changes between Version 35 and Version 36 of QualifiersUsed


Ignore:
Timestamp:
Jul 8, 2015, 2:40:18 PM (5 years ago)
Author:
mah79
Comment:

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  • QualifiersUsed

    v35 v36  
    77||'''Biological process''' ||
    88||GO BP || required (>200)            || Used when a gene is essential for a process to occur||
    9 ||GO BP ||localization_dependency(>200)|| DEPRECATED this is being migrated to annotation_extension by Kim ||
     9||GO BP || localization_dependency(>200)|| DEPRECATED this is being migrated to annotation_extension by Kim ||
    1010||GP BP || different_pathway (>50)    || DEPRECATED this can be stored by/ obtained from BioGRID, BUT store for later consistency check ||
    1111||GO BP || heterologous_system (97)   || WILL BE DEPRECATED ||
     
    3636||GO MF || inhibits (3)                   || This can probably be captured with the GO annotation, is there a difference between inhibits and negatively regulates? inhibits seems narrower?||
    3737|| GO MF|| constitutive (2)|| used with protein binding to indicate that protein A is ALWAYS bound to protein B...move to complex?||
    38 ||GO MF|| partially_redundant (3)        ||   
     38|| GO MF|| partially_redundant (3)        ||   
    3939|| GO MF || redundant_with    (3)          ||
    40 ||GO MF|| in_vitro (5)                   || Probably not necessary ||
     40|| GO MF|| in_vitro (5)                   || Probably not necessary ||
    4141||'''Cellular Component'''||
    4242||GO CC|| heterologous_system  (49) ||  WILL BE DEPRECATED ||
    43 ||GO CC|| colocalizes_with (47) ||  Official GO qulaifier <add link to description>  ||     
     43||GO CC|| colocalizes_with (47) ||  Official GO qualifier <add link to description>  ||     
    4444||GO CC|| predominantly  (22) ||           
    4545||GO CC|| constitutive (11) ||             
     
    4747||GO CC|| C_term  (4) ||Used when a gene product is a tandem fusion e.g.http://old.genedb.org/genedb/Search? ||                   
    4848||'''Phenotype'''||
    49 || FYPO|| deletion (5715)  || DEPRECRATED use allele= Kim will migrate this to allele
    50 || FYPO || overexpression (80) || DEPRECRATED use allele= Kim will migrate this to allele               |
    51 || FYPO || fitness_profiling (479)  ||
    52 ||FYPO|| at_high_temperature  (66)  ||
    53 ||FYPO|| at_normal_temperature  (66)  ||
    54 || FYPO ||high_penetrance (4)            ||
    55 ||FYPO|| low_penetrance  (25)       ||
    56 || FYPO  || weak (3)                ||
     49|| FYPO|| deletion (5715)  || DEPRECATED use allele= Kim will migrate this to allele ||
     50|| FYPO || overexpression (80) || DEPRECATED use allele= Kim will migrate this to allele    ||
     51|| FYPO || fitness_profiling (479)  || DEPRECATED use evidence (ECO:0000336)||
     52||FYPO|| at_high_temperature  (66)  || DEPRECATED use condition||
     53||FYPO|| at_normal_temperature  (66)  || DEPRECATED use condition||
     54|| FYPO ||high_penetrance (4)            || DEPRECATED use extension||
     55||FYPO|| low_penetrance  (25)       || DEPRECATED use extension||
     56|| FYPO  || weak (3)                ||DEPRECATED use extension||
    5757||FYPO|| in_minimal_media (4)       || DEPRECATED use condition=(condition_vocab:condition_id) IN PROGRESS ||
    5858||FYPO|| in_rich_media (1)       || DEPRECATED use condition=(condition_vocab:condition_id) IN PROGRESS ||
     
    6262|| FYPO ||during_nutrient_limitation (3)  || DEPRECATED use condition=(condition_vocab:condition_id) IN PROGRESS ||
    6363||'''Protein Modifications'''||
    64 || PSI_MOD|| predicted (150) ||DEPRECATED Use evidence= instead (with appropriate ECO evidence code)||
     64|| PSI_MOD|| predicted (150) || DEPRECATED Use evidence= instead (with appropriate ECO evidence code)||
    6565|| PSI_MOD|| in vitro (4) ||-||
    6666|| PSI_MOD|| inhibits  (2) ||-||