Changes between Version 63 and Version 64 of RelationsAndTransitivity


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Timestamp:
Mar 30, 2015, 12:58:22 PM (6 years ago)
Author:
mah79
Comment:

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  • RelationsAndTransitivity

    v63 v64  
    55== output_of ==
    66
    7 Propagation: Annotations should propagate over ''output_of'' ('''A''' ''output_of'' '''B''': all genes annotated to '''A''' should have annotation to '''B''' inferred).
     7Propagation: Annotations should propagate over ''output_of'' in the direction output A implies input B ('''A''' ''output_of'' '''B''': all genes annotated to '''A''' should have annotation to '''B''' inferred).
    88
    99Meaning: Phenotype '''A''' results from phenotype '''B'''. A mutation that causes phenotype '''A''' must also cause phenotype '''B'''.
     
    1111Search results: A query for '''B''' should retrieve both genes annotated directly to '''B''' and genes annotated to '''A'''. Genes annotated to '''A''' can therefore be found by searching directly for '''A''' or by searching for '''B'''. A query for '''A''' will not necessarily retrieve all genes annotated to '''B'''.
    1212
    13 Canto: The term page for '''B''' should offer '''A''' among the suggested terms.
     13Canto: TBD (under discussion)
    1414
    1515=== Examples: ===
     
    1717  * Meaning: If large and small daughter nuclei are formed, you can infer that complete but unequal mitotic sister chromatid segregation took place.
    1818  * Search results: A query for FYPO:0001270 should retrieve genes annotated to FYPO:0000284 as well as genes annotated directly to FYPO:0001270.
    19   * Canto: The term view for "FYPO:0001270 complete but unequal mitotic sister chromatid segregation" should offer "FYPO:0000284 large and small daughter nuclei" as a suggestion.
     19  * Canto: TBD (under discussion)
    2020
    2121 * Relation in FYPO: '''A''' FYPO:0002458 viable branched vegetative cell
    2222 ''output_of'' '''B''' FYPO:0001972 abnormal cytokinetic cell separation resulting in septated cell
    2323  * Meaning: If you see a viable branched vegetative cell, you can infer that abnormal cytokinetic cell separation resulting in septated cell took place.
    24   * Search results: A query for FYPO:000 should retrieve genes annotated to FYPO:000 as well as genes annotated directly to FYPO:000.
    25   * Canto: The term view for "FYPO:0002458 viable branched vegetative cell" should offer "FYPO:0001972 abnormal cytokinetic cell separation resulting in septated cell" as a suggestion.
     24  * Search results: A query for FYPO:0001972 should retrieve genes annotated to FYPO:0002458 as well as genes annotated directly to FYPO:0001972.
     25  * Canto: TBD (under discussion)
    2626
    2727== has_output ==
    2828
    29 Propagation: Annotations should propagate over ''has_output'' ('''A''' ''has_output'' '''B''': all genes annotated to '''A''' should have annotation to '''B''' inferred).
     29Propagation: Annotations should propagate over ''has_output'' in the direction input A implies output B ('''A''' ''has_output'' '''B''': all genes annotated to '''A''' should have annotation to '''B''' inferred).
    3030
    3131Meaning: Phenotype '''A''' always leads to phenotype '''B'''. A mutation that causes phenotype '''A''' therefore also causes phenotype '''B'''.