Changes between Version 64 and Version 65 of RelationsAndTransitivity


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Timestamp:
Jul 7, 2015, 4:17:00 PM (5 years ago)
Author:
mah79
Comment:

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  • RelationsAndTransitivity

    v64 v65  
    5555Search results: A query for '''B''' should retrieve both genes annotated directly to '''B''' and genes annotated to '''A'''.
    5656
    57 Canto: For abnormal phenotypes, the term page for '''B''' should offer '''A''' among the suggested terms. For normal phenotypes, the desired behavior is different, because a large-scale process or structure is normal only if all of its parts are normal. We therefore want to suppress the display of terms linked by has_part in the "normal phenotype" branch of FYPO (although this is not yet implemented as of this draft, 2015-03-11). See https://sourceforge.net/p/pombase/curation-tool/770/
     57Canto: For abnormal phenotypes, the term page for '''B''' should offer '''A''' among the suggested terms. For normal phenotypes, a question arose about the desired behavior, because a large-scale process or structure is normal only if all of its parts are normal. We have removed has_part links between "normal" terms in FYPO (even though they would be biologically and ontologically correct) to get around this problem.
    5858
    5959'''Note:''' This should ONLY be done for FYPO; GO annotations should (continue to) not be propagated over ''has_part'' in either direction.