Changes between Version 31 and Version 32 of TrackRelabelling


Ignore:
Timestamp:
Oct 20, 2014, 2:16:01 PM (6 years ago)
Author:
mah79
Comment:

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  • TrackRelabelling

    v31 v32  
    11
    2 == Track labels in progress (curators) ==
     2== Track labels for genome browser ==
    33
    4 || paper || Track current "red" label || New "red" label format ||
    5 ||  ||                         ||A Biological datatype||B methodology || C Experimental track difference (phase/condition/mutant)|| D strandedness (optional) ||E Author (year)||
     4Each track should have a label with five components: data type, method, track details, strand (optional) and citation.
     5
     6We should get enough details via the submission form (http://www.pombase.org/submit-data/data-submission-form) to generate a label for each track; email submitters if necessary. Include the labels in the Jira ticket for the submission.
     7
     8|| ||component||more info||example||
     9||A||Data type||the biological datatype; also indicate whether the track is an average/consensus/combination of replicates||transcripts||
     10||B||Method||the experimental technique used||tiling microarray||
     11||C||Track details||the experimental features that distinguish each track from others in the same experiment||mitosis, 972h-, haploid||
     12||D||Strand||forward or reverse (or leave blank if not relevant)||reverse strand||
     13||E||Citation||First author (year)||Soriano(2013)||
     14
     15Note: a number of specific track labels were stored here temporarily. Most have been deleted (but can be seen in the page history); a few have been retained as illustrative examples:
     16
    617
    718|| '''Soriano 2013''' ||
     
    103114Note: For the Mata poly(A) data, col C is blank because the only difference is strand, and col D covers that.
    104115
    105 == Label and other text changes applicable to all data types ==
     116== Lists of track component content used to date (last updated 2014-10-20): ==
     117Biological data types
     118 * chromatin binding
     119 * nucleosome positioning
     120 * poly(A) sites
     121 * replication origins
     122 * transcripts
     123
     124Methods
     125 * DamID / tiling array
     126 * HT sequencing
     127 * NGS
     128 * RNA-seq
     129 * tiling microarray
     130
     131
     132== Historical record of additional global changes requested and implemented ==
    106133
    1071341. "Configure this page" dialog