Changes between Version 72 and Version 73 of UsefulLinks


Ignore:
Timestamp:
Jul 7, 2015, 4:14:41 PM (5 years ago)
Author:
mah79
Comment:

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  • UsefulLinks

    v72 v73  
    4141
    4242 * Other trackers
    43   * [https://sourceforge.net/p/song/term-tracker/ Sequence Ontology]
     43  * [https://github.com/The-Sequence-Ontology/SO-Ontologies/issues Sequence Ontology]
    4444  * [https://github.com/gkoutos/pato/issues PATO]
    45   * [http://code.google.com/p/evidenceontology/issues/list Evidence code ontology (ECO)]
     45  * [https://github.com/evidenceontology/evidenceontology/issues Evidence code ontology (ECO)]
    4646  * [https://sourceforge.net/p/pro-obo/term-requests/ PRO]
    4747
     
    5151
    5252 * Ontologies
    53   * FYPO    [https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo-simple.obo fypo-simple.obo], which is what Kim loads into Canto, or [https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo.obo full FYPO]
    54    * to see relations used in the ontology, look at the "Typedef" stanzas at the bottom of the [https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/fypo_edit.obo FYPO editing file]
    55   * PECO (phenotype conditions)    https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/peco.obo
     53  * FYPO    [https://github.com/pombase/fypo/blob/master/release/fypo-simple.obo fypo-simple.obo], which is what Kim loads into Canto, or [https://github.com/pombase/fypo/blob/master/release/fypo.obo full FYPO]
     54   * to see relations used in the ontology, look at the "Typedef" stanzas at the bottom of the [https://github.com/pombase/fypo/blob/master/fypo_edit.obo FYPO editing file]
     55  * PECO (phenotype conditions)   
    5656  * GO      [http://purl.obolibrary.org/obo/go-basic.obo GO basic (used for Chado load)] or [http://purl.obolibrary.org/obo/go.obo complete core GO]
    57   * SO      https://sourceforge.net/p/song/svn/HEAD/tree/trunk/so-xp.obo
     57  * SO      http://purl.obolibrary.org/obo/so.obo
    5858  * PATO    http://purl.obolibrary.org/obo/quality.obo
    5959  * CL      http://purl.obolibrary.org/obo/cl.obo
     
    6161  * PSI-MOD http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mod/data/PSI-MOD.obo
    6262  * ECO
    63    * Current release: https://code.google.com/p/evidenceontology/source/browse/trunk/eco.obo
    64    * Editors' version (pre-release): https://code.google.com/p/evidenceontology/source/browse/trunk/eco-edit.obo
     63   * Current release: https://github.com/evidenceontology/evidenceontology/blob/master/eco.obo
     64   * Editors' version (pre-release): https://github.com/evidenceontology/evidenceontology/blob/master/eco-edit.obo
    6565  * RO      http://purl.obolibrary.org/obo/ro.obo
    6666  * GO annotation extension relations
     
    7272
    7373 * [http://lists.sanger.ac.uk/mailman/listinfo/pombelist pombelist] - the fission yeast community mailing list (Mailman info page)
    74  * [https://sourceforge.net/mail/?group_id=65526 SourceForge mailing lists] - topics parallel trackers
    7574
    7675== Trackers ==
    7776
    78  * [https://sourceforge.net/tracker/?group_id=65526 SourceForge trackers]
    79   * [https://sourceforge.net/tracker/?group_id=65526&atid=2525791 Curation tool]
     77 * !PomBase !GitHub trackers
     78  * [https://github.com/pombase/fypo/issues FYPO]
     79  * Curation tool
     80  * Curation tasks
    8081 * [http://www.ebi.ac.uk/panda/jira/browse/PB Jira tracker for Ensembl]
    8182 * [https://rt.sanger.ac.uk/Search/Simple.html?q=ebi-pombase Community helpdesk tracker]